BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:139.0 nTPM
HPA Brain:135.1 nTPM
GTEx:139.0 nTPM
FANTOM5:405.3 Scaled Tags Per Million
Macaque:54.3 nTPM
Mouse:69.5 nTPM
Rat:88.0 nTPM
Pig:176.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 135.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.6
2411 Female, age 72, unknown 137.5
1830 Male, age 51, unknown 134.4
1833 Male, age 53, unknown 132.9
1870 Female, age 42, unknown 124.7
2019 Male, age 18, unknown 116.1
2828 Female, age 72, unknown 111.1
1827 Male, age 72, unknown 82.5
2219 Male, age 76, both hemispheres 62.6
2666 Male, age 74, left hemisphere 61.4
2586 Male, age 75, left hemisphere 43.0
Dorsal raphe nucleus
nTPM: 96.7
2750 Male, age 76, both hemispheres 134.5
2016 Female, age 72, unknown 108.4
2298 Female, age 72, unknown 94.2
1828 Male, age 53, unknown 86.0
2047 Male, age 72, unknown 60.5
Inferior colliculus
nTPM: 67.0
2097 Female, age 72, unknown 75.1
1848 Female, age 42, unknown 68.3
1890 Male, age 53, unknown 62.9
2849 Male, age 72, unknown 61.8
Median raphe nucleus
nTPM: 77.7
2220 Male, age 76, midline 77.7
Periaquaductal grey, anterior
nTPM: 73.7
1947 Male, age 18, unknown 83.5
2502 Female, age 75, unknown 70.3
1795 Male, age 51, unknown 67.2
Periaquaductal grey, dorsal
nTPM: 78.7
2850 Male, age 76, both hemispheres 99.5
2464 Female, age 72, unknown 94.1
1831 Male, age 72, unknown 75.2
1840 Male, age 53, unknown 46.1
Periaquaductal grey, lateral
nTPM: 90.3
2272 Male, age 74, both hemispheres 102.1
2140 Male, age 76, both hemispheres 93.8
2053 Male, age 18, unknown 75.0
Pretectal area
nTPM: 82.6
2316 Male, age 76, right hemisphere 125.9
2273 Male, age 74, both hemispheres 123.3
1815 Male, age 53, unknown 109.9
1817 Female, age 42, unknown 94.9
2224 Female, age 72, unknown 82.4
2667 Female, age 75, unknown 78.3
2825 Male, age 18, unknown 75.7
2007 Male, age 72, unknown 69.8
2407 Male, age 75, both hemispheres 59.2
1816 Male, age 51, unknown 45.3
1944 Female, age 72, unknown 43.5
Red nucleus
nTPM: 135.1
1904 Male, age 53, unknown 193.0
1821 Female, age 72, unknown 186.3
1865 Male, age 51, unknown 162.3
2503 Female, age 72, unknown 148.5
1954 Female, age 42, unknown 146.6
2227 Male, age 72, unknown 144.7
2823 Male, age 76, right hemisphere 142.3
2785 Male, age 18, unknown 137.5
2769 Male, age 72, unknown 136.6
2725 Female, age 75, unknown 106.0
2588 Male, age 74, left hemisphere 63.5
2584 Male, age 75, left hemisphere 54.0
Substantia nigra
nTPM: 73.5
2590 Female, age 75, unknown 103.1
1851 Male, age 51, unknown 81.5
1889 Female, age 72, unknown 80.7
2409 Female, age 72, unknown 78.8
2699 Male, age 18, unknown 76.0
2583 Male, age 75, right hemisphere 67.7
1941 Male, age 53, unknown 66.9
2241 Male, age 72, unknown 66.6
1916 Female, age 42, unknown 60.9
2665 Male, age 74, both hemispheres 52.4
Superior colliculus
nTPM: 98.3
1995 Male, age 72, unknown 171.9
1913 Female, age 42, unknown 169.1
2587 Male, age 74, left hemisphere 108.0
1895 Male, age 76, right hemisphere 105.0
1839 Male, age 51, unknown 93.8
1796 Male, age 53, unknown 82.7
2668 Female, age 75, unknown 79.2
2261 Male, age 18, unknown 69.6
2087 Female, age 72, unknown 60.7
2664 Male, age 75, both hemispheres 42.8
Ventral tegmental area
nTPM: 106.1
2223 Female, age 72, unknown 179.2
2410 Female, age 72, unknown 130.0
1942 Male, age 51, unknown 88.4
1915 Female, age 42, unknown 82.9
2218 Male, age 76, both hemispheres 81.7
2021 Male, age 53, unknown 74.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 139.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 139.0
Samples: 183

Max nTPM: 426.3
Min nTPM: 19.5
Std nTPM: 58.3
Median nTPM: 125.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 426.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 340.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 290.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 289.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 287.6
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 278.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 265.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 265.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 256.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 252.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 242.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 405.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 405.3
FF:10158-103A5 76 years, female 405.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 54.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 54.3
Samples: 1

Max nTPM: 54.3
Min nTPM: 54.3
Sample A 54.3
Midbrain
nTPM: 40.2
Samples: 1

Max nTPM: 40.2
Min nTPM: 40.2
Sample A 40.2
Superior colliculi
nTPM: 41.5
Samples: 1

Max nTPM: 41.5
Min nTPM: 41.5
Sample A 41.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 176.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 176.6
Samples: 3

Max nTPM: 221.2
Min nTPM: 152.7
Sample A Female 221.2
Sample B Female 156.0
Sample C Male 152.7
Midbrain
nTPM: 126.1
Samples: 3

Max nTPM: 173.6
Min nTPM: 86.3
Sample B Female 173.6
Sample C Male 118.5
Sample D Male 86.3
Periaqueductal gray
nTPM: 162.7
Samples: 3

Max nTPM: 178.6
Min nTPM: 144.2
Sample B Female 165.4
Sample C Male 144.2
Sample D Male 178.6
Superior colliculi
nTPM: 152.2
Samples: 4

Max nTPM: 169.3
Min nTPM: 122.6
Sample A Female 169.3
Sample B Female 122.6
Sample C Male 164.9
Sample D Male 152.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 69.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.6
Samples: 4

Max nTPM: 75.3
Min nTPM: 66.9
Sample A 75.3
Sample B 68.9
Sample C 66.9
Sample D 67.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 88.0
Rat sample Sample description nTPM
Midbrain
nTPM: 88.0
Samples: 4

Max nTPM: 91.8
Min nTPM: 83.0
Sample A 83.0
Sample A 91.8
Sample A 87.7
Sample A 89.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo