A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.1
nTPM
Monaco:
54.9
nTPM
Schmiedel:
16.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.1
HPA sample
nTPM
Classical monocyte nTPM: 61.1
Samples: 6
Max nTPM: 290.1
Min nTPM: 2.9
P10809_1003
13.6
P10809_1020
290.1
P10809_1039
11.7
P10809_1058
2.9
P10809_1080
15.5
P10809_1107
32.7
Intermediate monocyte nTPM: 23.6
Samples: 6
Max nTPM: 106.9
Min nTPM: 0.3
P10809_1004
2.6
P10809_1023
106.9
P10809_1042
3.8
P10809_1061
0.3
P10809_1081
8.2
P10809_1108
19.8
Non-classical monocyte nTPM: 0.6
Samples: 5
Max nTPM: 1.4
Min nTPM: 0.3
P10809_1005
0.4
P10809_1053
0.3
P10809_1072
0.3
P10809_1082
0.4
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.9
Monaco sample
nTPM
Classical monocyte nTPM: 54.9
Samples: 4
Max nTPM: 105.6
Min nTPM: 21.3
RHH5313_R3680
21.3
RHH5221_R3593
37.2
RHH5250_R3622
55.4
RHH5279_R3651
105.6
Intermediate monocyte nTPM: 13.9
Samples: 4
Max nTPM: 38.2
Min nTPM: 2.5
RHH5314_R3681
7.7
RHH5222_R3594
2.5
RHH5251_R3623
7.0
RHH5280_R3652
38.2
Non-classical monocyte nTPM: 0.4
Samples: 4
Max nTPM: 0.6
Min nTPM: 0.0
RHH5315_R3682
0.0
RHH5223_R3595
0.6
RHH5252_R3624
0.4
RHH5281_R3653
0.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
Schmiedel sample id
TPM
Classical monocyte TPM: 16.0
Samples: 91
Max TPM: 126.8
Min TPM: 1.1
MONOCYTES_1
126.8
MONOCYTES_2
114.4
MONOCYTES_3
87.2
MONOCYTES_4
86.7
MONOCYTES_5
75.9
MONOCYTES_6
59.4
MONOCYTES_7
38.5
MONOCYTES_8
33.1
MONOCYTES_9
30.6
MONOCYTES_10
29.8
MONOCYTES_11
26.9
MONOCYTES_12
25.6
MONOCYTES_13
23.6
MONOCYTES_14
22.9
MONOCYTES_15
22.8
MONOCYTES_16
22.8
MONOCYTES_17
22.1
MONOCYTES_18
21.1
MONOCYTES_19
20.8
MONOCYTES_20
19.6
MONOCYTES_21
18.3
MONOCYTES_22
16.0
MONOCYTES_23
15.3
MONOCYTES_24
14.7
MONOCYTES_25
14.3
MONOCYTES_26
13.9
MONOCYTES_27
13.8
MONOCYTES_28
13.0
MONOCYTES_29
12.8
MONOCYTES_30
12.4
MONOCYTES_31
12.3
MONOCYTES_32
12.2
MONOCYTES_33
12.0
MONOCYTES_34
12.0
MONOCYTES_35
11.8
MONOCYTES_36
11.5
MONOCYTES_37
11.3
MONOCYTES_38
11.2
MONOCYTES_39
11.2
MONOCYTES_40
10.3
MONOCYTES_41
10.0
MONOCYTES_42
9.7
MONOCYTES_43
9.6
MONOCYTES_44
9.2
MONOCYTES_45
9.2
MONOCYTES_46
9.1
MONOCYTES_47
9.0
MONOCYTES_48
8.9
MONOCYTES_49
8.8
MONOCYTES_50
8.6
MONOCYTES_51
8.5
MONOCYTES_52
8.3
MONOCYTES_53
8.2
MONOCYTES_54
8.1
MONOCYTES_55
7.8
MONOCYTES_56
7.7
MONOCYTES_57
7.0
MONOCYTES_58
6.9
MONOCYTES_59
6.7
MONOCYTES_60
6.6
MONOCYTES_61
6.2
MONOCYTES_62
6.2
MONOCYTES_63
5.8
MONOCYTES_64
5.7
MONOCYTES_65
5.5
MONOCYTES_66
5.4
MONOCYTES_67
5.0
MONOCYTES_68
5.0
MONOCYTES_69
4.7
MONOCYTES_70
4.7
MONOCYTES_71
4.5
MONOCYTES_72
4.4
MONOCYTES_73
4.4
MONOCYTES_74
4.2
MONOCYTES_75
4.2
MONOCYTES_76
4.0
MONOCYTES_77
3.3
MONOCYTES_78
2.8
MONOCYTES_79
2.8
MONOCYTES_80
2.7
MONOCYTES_81
2.7
MONOCYTES_82
2.6
MONOCYTES_83
2.5
MONOCYTES_84
2.2
MONOCYTES_85
2.1
MONOCYTES_86
2.1
MONOCYTES_87
1.9
MONOCYTES_88
1.7
MONOCYTES_89
1.6
MONOCYTES_90
1.4
MONOCYTES_91
1.1
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Non-classical monocyte TPM: 0.9
Samples: 90
Max TPM: 11.8
Min TPM: 0.0
M2_1
11.8
M2_2
10.5
M2_3
9.9
M2_4
9.1
M2_5
7.6
M2_6
5.1
M2_7
1.6
M2_8
1.4
M2_9
1.0
M2_10
0.9
M2_11
0.8
M2_12
0.8
M2_13
0.8
M2_14
0.8
M2_15
0.7
M2_16
0.7
M2_17
0.7
M2_18
0.6
M2_19
0.6
M2_20
0.5
M2_21
0.5
M2_22
0.5
M2_23
0.4
M2_24
0.4
M2_25
0.4
M2_26
0.4
M2_27
0.4
M2_28
0.4
M2_29
0.4
M2_30
0.4
M2_31
0.4
M2_32
0.4
M2_33
0.4
M2_34
0.3
M2_35
0.3
M2_36
0.3
M2_37
0.3
M2_38
0.3
M2_39
0.3
M2_40
0.3
M2_41
0.3
M2_42
0.2
M2_43
0.2
M2_44
0.2
M2_45
0.2
M2_46
0.2
M2_47
0.2
M2_48
0.2
M2_49
0.2
M2_50
0.2
M2_51
0.2
M2_52
0.2
M2_53
0.2
M2_54
0.1
M2_55
0.1
M2_56
0.1
M2_57
0.1
M2_58
0.1
M2_59
0.1
M2_60
0.1
M2_61
0.1
M2_62
0.1
M2_63
0.1
M2_64
0.1
M2_65
0.1
M2_66
0.1
M2_67
0.1
M2_68
0.1
M2_69
0.1
M2_70
0.1
M2_71
0.0
M2_72
0.0
M2_73
0.0
M2_74
0.0
M2_75
0.0
M2_76
0.0
M2_77
0.0
M2_78
0.0
M2_79
0.0
M2_80
0.0
M2_81
0.0
M2_82
0.0
M2_83
0.0
M2_84
0.0
M2_85
0.0
M2_86
0.0
M2_87
0.0
M2_88
0.0
M2_89
0.0
M2_90
0.0
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The Human Protein Atlas project is funded
