A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.7
nTPM
Monaco:
34.9
nTPM
Schmiedel:
68.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.7
HPA sample
nTPM
Classical monocyte nTPM: 4.8
Samples: 6
Max nTPM: 10.4
Min nTPM: 1.8
P10809_1003
10.4
P10809_1020
5.1
P10809_1039
3.3
P10809_1058
1.8
P10809_1080
2.4
P10809_1107
5.6
Intermediate monocyte nTPM: 3.3
Samples: 6
Max nTPM: 9.9
Min nTPM: 0.0
P10809_1004
9.9
P10809_1023
2.1
P10809_1042
2.4
P10809_1061
0.0
P10809_1081
0.6
P10809_1108
4.6
Non-classical monocyte nTPM: 6.7
Samples: 5
Max nTPM: 19.7
Min nTPM: 0.8
P10809_1005
8.9
P10809_1053
0.8
P10809_1072
19.7
P10809_1082
1.8
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.9
Monaco sample
nTPM
Classical monocyte nTPM: 34.9
Samples: 4
Max nTPM: 64.1
Min nTPM: 8.3
RHH5313_R3680
38.0
RHH5221_R3593
64.1
RHH5250_R3622
8.3
RHH5279_R3651
29.2
Intermediate monocyte nTPM: 27.8
Samples: 4
Max nTPM: 42.2
Min nTPM: 4.0
RHH5314_R3681
33.5
RHH5222_R3594
42.2
RHH5251_R3623
31.5
RHH5280_R3652
4.0
Non-classical monocyte nTPM: 33.8
Samples: 4
Max nTPM: 58.6
Min nTPM: 0.0
RHH5315_R3682
58.6
RHH5223_R3595
34.3
RHH5252_R3624
42.3
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.9
Schmiedel sample id
TPM
Classical monocyte TPM: 68.9
Samples: 91
Max TPM: 100.2
Min TPM: 39.3
MONOCYTES_1
100.2
MONOCYTES_2
94.8
MONOCYTES_3
94.1
MONOCYTES_4
93.9
MONOCYTES_5
91.5
MONOCYTES_6
91.4
MONOCYTES_7
91.0
MONOCYTES_8
90.8
MONOCYTES_9
90.8
MONOCYTES_10
89.5
MONOCYTES_11
88.4
MONOCYTES_12
87.8
MONOCYTES_13
87.2
MONOCYTES_14
86.1
MONOCYTES_15
85.8
MONOCYTES_16
84.9
MONOCYTES_17
84.5
MONOCYTES_18
83.7
MONOCYTES_19
83.5
MONOCYTES_20
82.9
MONOCYTES_21
82.4
MONOCYTES_22
82.2
MONOCYTES_23
81.1
MONOCYTES_24
80.7
MONOCYTES_25
79.9
MONOCYTES_26
79.6
MONOCYTES_27
79.2
MONOCYTES_28
78.4
MONOCYTES_29
78.1
MONOCYTES_30
77.8
MONOCYTES_31
76.0
MONOCYTES_32
75.9
MONOCYTES_33
75.8
MONOCYTES_34
75.8
MONOCYTES_35
75.2
MONOCYTES_36
75.0
MONOCYTES_37
74.2
MONOCYTES_38
72.9
MONOCYTES_39
72.8
MONOCYTES_40
72.7
MONOCYTES_41
72.4
MONOCYTES_42
71.8
MONOCYTES_43
70.4
MONOCYTES_44
69.3
MONOCYTES_45
68.9
MONOCYTES_46
67.2
MONOCYTES_47
67.0
MONOCYTES_48
66.7
MONOCYTES_49
66.2
MONOCYTES_50
66.0
MONOCYTES_51
66.0
MONOCYTES_52
65.9
MONOCYTES_53
65.6
MONOCYTES_54
65.4
MONOCYTES_55
65.4
MONOCYTES_56
64.7
MONOCYTES_57
64.5
MONOCYTES_58
64.2
MONOCYTES_59
64.1
MONOCYTES_60
63.8
MONOCYTES_61
62.5
MONOCYTES_62
61.5
MONOCYTES_63
61.2
MONOCYTES_64
60.5
MONOCYTES_65
60.1
MONOCYTES_66
59.9
MONOCYTES_67
59.5
MONOCYTES_68
59.2
MONOCYTES_69
59.1
MONOCYTES_70
58.2
MONOCYTES_71
56.8
MONOCYTES_72
56.7
MONOCYTES_73
56.6
MONOCYTES_74
56.4
MONOCYTES_75
55.6
MONOCYTES_76
51.9
MONOCYTES_77
51.1
MONOCYTES_78
50.9
MONOCYTES_79
50.8
MONOCYTES_80
47.3
MONOCYTES_81
47.2
MONOCYTES_82
45.7
MONOCYTES_83
45.2
MONOCYTES_84
45.1
MONOCYTES_85
44.5
MONOCYTES_86
43.5
MONOCYTES_87
43.0
MONOCYTES_88
41.6
MONOCYTES_89
39.5
MONOCYTES_90
39.4
MONOCYTES_91
39.3
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Non-classical monocyte TPM: 47.2
Samples: 90
Max TPM: 76.5
Min TPM: 22.2
M2_1
76.5
M2_2
74.0
M2_3
70.1
M2_4
67.7
M2_5
67.3
M2_6
66.8
M2_7
64.7
M2_8
63.0
M2_9
62.6
M2_10
62.1
M2_11
60.9
M2_12
60.5
M2_13
60.5
M2_14
59.8
M2_15
59.5
M2_16
59.2
M2_17
59.1
M2_18
58.7
M2_19
57.5
M2_20
57.2
M2_21
56.5
M2_22
56.2
M2_23
55.7
M2_24
55.5
M2_25
55.5
M2_26
55.5
M2_27
55.0
M2_28
54.9
M2_29
54.6
M2_30
54.4
M2_31
54.0
M2_32
54.0
M2_33
53.9
M2_34
53.6
M2_35
51.9
M2_36
51.3
M2_37
50.3
M2_38
50.0
M2_39
50.0
M2_40
49.2
M2_41
49.0
M2_42
48.9
M2_43
48.6
M2_44
47.3
M2_45
47.3
M2_46
46.9
M2_47
46.8
M2_48
46.8
M2_49
46.6
M2_50
46.3
M2_51
45.7
M2_52
45.7
M2_53
45.4
M2_54
45.1
M2_55
44.9
M2_56
44.1
M2_57
43.8
M2_58
43.8
M2_59
42.6
M2_60
42.5
M2_61
42.0
M2_62
41.7
M2_63
40.5
M2_64
39.7
M2_65
39.3
M2_66
38.7
M2_67
38.2
M2_68
37.9
M2_69
36.6
M2_70
35.7
M2_71
35.3
M2_72
34.0
M2_73
33.9
M2_74
33.7
M2_75
33.4
M2_76
33.2
M2_77
33.2
M2_78
32.9
M2_79
32.3
M2_80
31.3
M2_81
30.4
M2_82
30.3
M2_83
29.6
M2_84
28.2
M2_85
27.4
M2_86
26.3
M2_87
24.5
M2_88
23.4
M2_89
22.8
M2_90
22.2
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