A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
16.0
nTPM
Schmiedel:
18.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.1
Samples: 6
Max nTPM: 6.1
Min nTPM: 0.0
P10809_1013
0.1
P10809_1033
0.0
P10809_1052
0.0
P10809_1071
0.0
P10809_1093
6.1
P10809_1103
0.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
Monaco sample
nTPM
NK-cell nTPM: 16.0
Samples: 4
Max nTPM: 25.1
Min nTPM: 9.3
RHH5316_R3683
25.1
RHH5224_R3596
9.3
RHH5253_R3625
14.1
RHH5282_R3654
15.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.4
Schmiedel sample id
TPM
NK-cell TPM: 18.3
Samples: 90
Max TPM: 42.4
Min TPM: 7.2
NK_1
42.4
NK_2
35.8
NK_3
34.5
NK_4
33.9
NK_5
32.3
NK_6
31.3
NK_7
29.1
NK_8
25.6
NK_9
24.9
NK_10
24.8
NK_11
24.8
NK_12
24.7
NK_13
24.6
NK_14
24.6
NK_15
23.7
NK_16
23.5
NK_17
22.7
NK_18
22.7
NK_19
21.7
NK_20
21.6
NK_21
21.5
NK_22
21.1
NK_23
21.0
NK_24
20.9
NK_25
20.9
NK_26
20.8
NK_27
20.5
NK_28
20.5
NK_29
20.4
NK_30
20.3
NK_31
20.2
NK_32
20.2
NK_33
19.5
NK_34
19.4
NK_35
19.3
NK_36
18.9
NK_37
18.9
NK_38
18.8
NK_39
18.7
NK_40
18.6
NK_41
18.5
NK_42
18.2
NK_43
17.9
NK_44
17.3
NK_45
17.2
NK_46
17.0
NK_47
16.8
NK_48
16.6
NK_49
16.4
NK_50
16.4
NK_51
16.2
NK_52
16.1
NK_53
16.0
NK_54
15.9
NK_55
15.5
NK_56
15.5
NK_57
15.4
NK_58
15.3
NK_59
15.3
NK_60
15.3
NK_61
15.2
NK_62
14.9
NK_63
14.6
NK_64
14.4
NK_65
14.0
NK_66
13.9
NK_67
13.7
NK_68
13.7
NK_69
13.5
NK_70
13.5
NK_71
13.2
NK_72
12.6
NK_73
12.4
NK_74
12.2
NK_75
12.2
NK_76
12.1
NK_77
12.0
NK_78
12.0
NK_79
12.0
NK_80
12.0
NK_81
11.9
NK_82
11.8
NK_83
11.8
NK_84
11.6
NK_85
11.6
NK_86
11.5
NK_87
11.2
NK_88
11.0
NK_89
9.0
NK_90
7.2
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