A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.5
nTPM
Monaco:
79.3
nTPM
Schmiedel:
164.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.5
HPA sample
nTPM
Classical monocyte nTPM: 9.5
Samples: 6
Max nTPM: 11.3
Min nTPM: 7.4
P10809_1003
11.1
P10809_1020
9.7
P10809_1039
7.4
P10809_1058
11.3
P10809_1080
7.9
P10809_1107
9.6
Intermediate monocyte nTPM: 5.7
Samples: 6
Max nTPM: 10.6
Min nTPM: 2.9
P10809_1004
4.1
P10809_1023
2.9
P10809_1042
6.1
P10809_1061
10.6
P10809_1081
5.6
P10809_1108
5.0
Non-classical monocyte nTPM: 0.0
Samples: 5
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.3
Monaco sample
nTPM
Classical monocyte nTPM: 79.3
Samples: 4
Max nTPM: 112.7
Min nTPM: 53.6
RHH5313_R3680
59.5
RHH5221_R3593
112.7
RHH5250_R3622
91.4
RHH5279_R3651
53.6
Intermediate monocyte nTPM: 25.0
Samples: 4
Max nTPM: 33.1
Min nTPM: 15.4
RHH5314_R3681
24.5
RHH5222_R3594
33.1
RHH5251_R3623
15.4
RHH5280_R3652
27.1
Non-classical monocyte nTPM: 0.8
Samples: 4
Max nTPM: 1.3
Min nTPM: 0.1
RHH5315_R3682
0.7
RHH5223_R3595
1.3
RHH5252_R3624
0.1
RHH5281_R3653
0.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.9
Schmiedel sample id
TPM
Classical monocyte TPM: 164.9
Samples: 91
Max TPM: 298.1
Min TPM: 46.5
MONOCYTES_1
298.1
MONOCYTES_2
279.4
MONOCYTES_3
275.7
MONOCYTES_4
274.8
MONOCYTES_5
272.4
MONOCYTES_6
261.6
MONOCYTES_7
252.4
MONOCYTES_8
250.9
MONOCYTES_9
248.7
MONOCYTES_10
243.9
MONOCYTES_11
243.2
MONOCYTES_12
237.7
MONOCYTES_13
237.4
MONOCYTES_14
235.8
MONOCYTES_15
233.1
MONOCYTES_16
227.9
MONOCYTES_17
226.0
MONOCYTES_18
225.7
MONOCYTES_19
224.9
MONOCYTES_20
224.8
MONOCYTES_21
219.2
MONOCYTES_22
216.5
MONOCYTES_23
214.7
MONOCYTES_24
209.5
MONOCYTES_25
208.9
MONOCYTES_26
208.5
MONOCYTES_27
208.0
MONOCYTES_28
202.9
MONOCYTES_29
199.8
MONOCYTES_30
198.5
MONOCYTES_31
188.7
MONOCYTES_32
188.1
MONOCYTES_33
184.8
MONOCYTES_34
184.3
MONOCYTES_35
183.5
MONOCYTES_36
180.6
MONOCYTES_37
179.6
MONOCYTES_38
176.1
MONOCYTES_39
170.1
MONOCYTES_40
169.1
MONOCYTES_41
167.8
MONOCYTES_42
166.1
MONOCYTES_43
165.7
MONOCYTES_44
163.8
MONOCYTES_45
163.7
MONOCYTES_46
163.4
MONOCYTES_47
162.7
MONOCYTES_48
161.8
MONOCYTES_49
160.8
MONOCYTES_50
159.9
MONOCYTES_51
158.3
MONOCYTES_52
150.4
MONOCYTES_53
149.9
MONOCYTES_54
148.0
MONOCYTES_55
145.7
MONOCYTES_56
144.8
MONOCYTES_57
143.4
MONOCYTES_58
141.1
MONOCYTES_59
140.9
MONOCYTES_60
137.7
MONOCYTES_61
134.9
MONOCYTES_62
133.0
MONOCYTES_63
131.4
MONOCYTES_64
127.5
MONOCYTES_65
126.5
MONOCYTES_66
126.2
MONOCYTES_67
121.4
MONOCYTES_68
118.6
MONOCYTES_69
118.4
MONOCYTES_70
115.4
MONOCYTES_71
109.0
MONOCYTES_72
108.5
MONOCYTES_73
107.8
MONOCYTES_74
105.0
MONOCYTES_75
101.4
MONOCYTES_76
100.5
MONOCYTES_77
99.3
MONOCYTES_78
97.5
MONOCYTES_79
88.0
MONOCYTES_80
86.6
MONOCYTES_81
83.1
MONOCYTES_82
82.8
MONOCYTES_83
81.3
MONOCYTES_84
76.8
MONOCYTES_85
76.6
MONOCYTES_86
75.7
MONOCYTES_87
75.4
MONOCYTES_88
74.9
MONOCYTES_89
65.0
MONOCYTES_90
48.8
MONOCYTES_91
46.5
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Non-classical monocyte TPM: 0.1
Samples: 90
Max TPM: 1.6
Min TPM: 0.0
M2_1
1.6
M2_2
1.4
M2_3
0.4
M2_4
0.4
M2_5
0.2
M2_6
0.2
M2_7
0.2
M2_8
0.2
M2_9
0.2
M2_10
0.2
M2_11
0.2
M2_12
0.2
M2_13
0.2
M2_14
0.1
M2_15
0.1
M2_16
0.1
M2_17
0.1
M2_18
0.1
M2_19
0.1
M2_20
0.1
M2_21
0.1
M2_22
0.1
M2_23
0.1
M2_24
0.1
M2_25
0.1
M2_26
0.1
M2_27
0.1
M2_28
0.1
M2_29
0.1
M2_30
0.1
M2_31
0.1
M2_32
0.1
M2_33
0.1
M2_34
0.1
M2_35
0.1
M2_36
0.1
M2_37
0.1
M2_38
0.1
M2_39
0.1
M2_40
0.1
M2_41
0.1
M2_42
0.1
M2_43
0.1
M2_44
0.0
M2_45
0.0
M2_46
0.0
M2_47
0.0
M2_48
0.0
M2_49
0.0
M2_50
0.0
M2_51
0.0
M2_52
0.0
M2_53
0.0
M2_54
0.0
M2_55
0.0
M2_56
0.0
M2_57
0.0
M2_58
0.0
M2_59
0.0
M2_60
0.0
M2_61
0.0
M2_62
0.0
M2_63
0.0
M2_64
0.0
M2_65
0.0
M2_66
0.0
M2_67
0.0
M2_68
0.0
M2_69
0.0
M2_70
0.0
M2_71
0.0
M2_72
0.0
M2_73
0.0
M2_74
0.0
M2_75
0.0
M2_76
0.0
M2_77
0.0
M2_78
0.0
M2_79
0.0
M2_80
0.0
M2_81
0.0
M2_82
0.0
M2_83
0.0
M2_84
0.0
M2_85
0.0
M2_86
0.0
M2_87
0.0
M2_88
0.0
M2_89
0.0
M2_90
0.0
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