A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
247.4
nTPM
Monaco:
744.2
nTPM
Schmiedel:
470.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
247.4
HPA sample
nTPM
Classical monocyte nTPM: 247.4
Samples: 6
Max nTPM: 377.3
Min nTPM: 190.8
P10809_1003
377.3
P10809_1020
286.6
P10809_1039
190.8
P10809_1058
197.5
P10809_1080
200.4
P10809_1107
231.7
Intermediate monocyte nTPM: 241.4
Samples: 6
Max nTPM: 306.6
Min nTPM: 192.7
P10809_1004
261.2
P10809_1023
238.6
P10809_1042
253.6
P10809_1061
306.6
P10809_1081
195.4
P10809_1108
192.7
Non-classical monocyte nTPM: 205.1
Samples: 5
Max nTPM: 310.8
Min nTPM: 148.6
P10809_1005
202.7
P10809_1053
198.2
P10809_1072
310.8
P10809_1082
148.6
P10809_1109
165.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
744.2
Monaco sample
nTPM
Classical monocyte nTPM: 717.1
Samples: 4
Max nTPM: 770.8
Min nTPM: 682.6
RHH5313_R3680
770.8
RHH5221_R3593
682.6
RHH5250_R3622
693.8
RHH5279_R3651
721.3
Intermediate monocyte nTPM: 744.2
Samples: 4
Max nTPM: 788.9
Min nTPM: 633.8
RHH5314_R3681
769.0
RHH5222_R3594
785.1
RHH5251_R3623
633.8
RHH5280_R3652
788.9
Non-classical monocyte nTPM: 633.8
Samples: 4
Max nTPM: 646.7
Min nTPM: 621.5
RHH5315_R3682
621.5
RHH5223_R3595
646.7
RHH5252_R3624
626.9
RHH5281_R3653
640.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
470.3
Schmiedel sample id
TPM
Classical monocyte TPM: 470.3
Samples: 91
Max TPM: 597.0
Min TPM: 293.2
MONOCYTES_1
597.0
MONOCYTES_2
593.0
MONOCYTES_3
589.0
MONOCYTES_4
585.6
MONOCYTES_5
584.4
MONOCYTES_6
583.0
MONOCYTES_7
576.0
MONOCYTES_8
574.2
MONOCYTES_9
563.3
MONOCYTES_10
558.7
MONOCYTES_11
554.9
MONOCYTES_12
553.2
MONOCYTES_13
552.0
MONOCYTES_14
551.4
MONOCYTES_15
546.6
MONOCYTES_16
541.8
MONOCYTES_17
536.1
MONOCYTES_18
533.6
MONOCYTES_19
530.8
MONOCYTES_20
524.5
MONOCYTES_21
520.8
MONOCYTES_22
520.7
MONOCYTES_23
520.0
MONOCYTES_24
519.8
MONOCYTES_25
517.1
MONOCYTES_26
515.5
MONOCYTES_27
514.7
MONOCYTES_28
514.3
MONOCYTES_29
512.9
MONOCYTES_30
512.6
MONOCYTES_31
506.0
MONOCYTES_32
503.8
MONOCYTES_33
495.3
MONOCYTES_34
492.7
MONOCYTES_35
490.8
MONOCYTES_36
488.8
MONOCYTES_37
488.6
MONOCYTES_38
488.3
MONOCYTES_39
483.7
MONOCYTES_40
482.8
MONOCYTES_41
479.1
MONOCYTES_42
476.0
MONOCYTES_43
475.8
MONOCYTES_44
473.3
MONOCYTES_45
470.0
MONOCYTES_46
469.4
MONOCYTES_47
468.7
MONOCYTES_48
468.5
MONOCYTES_49
466.5
MONOCYTES_50
465.8
MONOCYTES_51
464.2
MONOCYTES_52
464.2
MONOCYTES_53
460.0
MONOCYTES_54
460.0
MONOCYTES_55
459.5
MONOCYTES_56
459.2
MONOCYTES_57
458.8
MONOCYTES_58
456.1
MONOCYTES_59
454.6
MONOCYTES_60
451.3
MONOCYTES_61
443.5
MONOCYTES_62
437.7
MONOCYTES_63
433.3
MONOCYTES_64
433.2
MONOCYTES_65
432.4
MONOCYTES_66
431.8
MONOCYTES_67
430.0
MONOCYTES_68
429.7
MONOCYTES_69
426.5
MONOCYTES_70
424.1
MONOCYTES_71
423.8
MONOCYTES_72
417.9
MONOCYTES_73
413.8
MONOCYTES_74
407.1
MONOCYTES_75
405.1
MONOCYTES_76
402.4
MONOCYTES_77
401.7
MONOCYTES_78
400.1
MONOCYTES_79
383.9
MONOCYTES_80
382.4
MONOCYTES_81
382.1
MONOCYTES_82
377.6
MONOCYTES_83
376.6
MONOCYTES_84
372.1
MONOCYTES_85
370.1
MONOCYTES_86
367.5
MONOCYTES_87
344.8
MONOCYTES_88
324.3
MONOCYTES_89
318.5
MONOCYTES_90
293.8
MONOCYTES_91
293.2
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Non-classical monocyte TPM: 414.5
Samples: 90
Max TPM: 648.6
Min TPM: 237.8
M2_1
648.6
M2_2
614.3
M2_3
605.2
M2_4
560.4
M2_5
559.6
M2_6
537.5
M2_7
526.4
M2_8
514.8
M2_9
509.5
M2_10
504.8
M2_11
499.7
M2_12
497.7
M2_13
496.7
M2_14
485.2
M2_15
485.2
M2_16
483.8
M2_17
483.4
M2_18
483.3
M2_19
481.3
M2_20
481.0
M2_21
480.6
M2_22
476.6
M2_23
470.7
M2_24
467.9
M2_25
465.0
M2_26
464.7
M2_27
464.1
M2_28
463.7
M2_29
458.2
M2_30
452.7
M2_31
452.2
M2_32
448.8
M2_33
447.7
M2_34
447.1
M2_35
446.8
M2_36
437.9
M2_37
435.8
M2_38
433.7
M2_39
425.7
M2_40
422.7
M2_41
422.0
M2_42
419.3
M2_43
417.8
M2_44
416.7
M2_45
415.8
M2_46
407.5
M2_47
405.4
M2_48
404.8
M2_49
399.8
M2_50
396.8
M2_51
396.5
M2_52
392.8
M2_53
392.5
M2_54
379.5
M2_55
379.5
M2_56
373.8
M2_57
373.8
M2_58
373.6
M2_59
372.7
M2_60
370.1
M2_61
369.2
M2_62
367.8
M2_63
366.7
M2_64
363.2
M2_65
360.2
M2_66
359.2
M2_67
358.9
M2_68
357.7
M2_69
357.4
M2_70
356.6
M2_71
355.8
M2_72
354.4
M2_73
349.5
M2_74
345.2
M2_75
342.4
M2_76
336.3
M2_77
330.5
M2_78
328.5
M2_79
322.5
M2_80
319.7
M2_81
317.3
M2_82
313.9
M2_83
303.6
M2_84
298.6
M2_85
294.0
M2_86
291.9
M2_87
290.7
M2_88
281.6
M2_89
240.9
M2_90
237.8
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