A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
119.0
nTPM
Monaco:
407.7
nTPM
Schmiedel:
326.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
119.0
HPA sample
nTPM
Classical monocyte nTPM: 59.6
Samples: 6
Max nTPM: 67.9
Min nTPM: 52.4
P10809_1003
66.2
P10809_1020
67.9
P10809_1039
65.1
P10809_1058
53.2
P10809_1080
52.4
P10809_1107
52.7
Intermediate monocyte nTPM: 95.4
Samples: 6
Max nTPM: 116.6
Min nTPM: 69.7
P10809_1004
116.6
P10809_1023
108.5
P10809_1042
96.1
P10809_1061
103.3
P10809_1081
69.7
P10809_1108
78.1
Non-classical monocyte nTPM: 119.0
Samples: 5
Max nTPM: 154.4
Min nTPM: 74.9
P10809_1005
109.6
P10809_1053
139.1
P10809_1072
154.4
P10809_1082
74.9
P10809_1109
117.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
407.7
Monaco sample
nTPM
Classical monocyte nTPM: 227.6
Samples: 4
Max nTPM: 274.1
Min nTPM: 198.4
RHH5313_R3680
205.9
RHH5221_R3593
274.1
RHH5250_R3622
232.1
RHH5279_R3651
198.4
Intermediate monocyte nTPM: 352.8
Samples: 4
Max nTPM: 450.5
Min nTPM: 293.4
RHH5314_R3681
293.4
RHH5222_R3594
450.5
RHH5251_R3623
316.2
RHH5280_R3652
351.1
Non-classical monocyte nTPM: 407.7
Samples: 4
Max nTPM: 444.3
Min nTPM: 378.1
RHH5315_R3682
428.9
RHH5223_R3595
444.3
RHH5252_R3624
378.1
RHH5281_R3653
379.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
326.9
Schmiedel sample id
TPM
Classical monocyte TPM: 141.2
Samples: 91
Max TPM: 193.4
Min TPM: 109.3
MONOCYTES_1
193.4
MONOCYTES_2
191.6
MONOCYTES_3
188.8
MONOCYTES_4
181.4
MONOCYTES_5
180.3
MONOCYTES_6
177.1
MONOCYTES_7
175.1
MONOCYTES_8
173.3
MONOCYTES_9
172.6
MONOCYTES_10
170.7
MONOCYTES_11
170.2
MONOCYTES_12
166.8
MONOCYTES_13
165.7
MONOCYTES_14
161.6
MONOCYTES_15
160.8
MONOCYTES_16
159.7
MONOCYTES_17
159.5
MONOCYTES_18
154.2
MONOCYTES_19
153.8
MONOCYTES_20
153.6
MONOCYTES_21
153.6
MONOCYTES_22
152.4
MONOCYTES_23
151.8
MONOCYTES_24
151.3
MONOCYTES_25
151.1
MONOCYTES_26
150.9
MONOCYTES_27
148.1
MONOCYTES_28
148.1
MONOCYTES_29
148.1
MONOCYTES_30
147.4
MONOCYTES_31
145.7
MONOCYTES_32
144.2
MONOCYTES_33
144.1
MONOCYTES_34
143.7
MONOCYTES_35
143.4
MONOCYTES_36
143.4
MONOCYTES_37
143.3
MONOCYTES_38
142.7
MONOCYTES_39
142.5
MONOCYTES_40
141.7
MONOCYTES_41
140.6
MONOCYTES_42
140.4
MONOCYTES_43
140.4
MONOCYTES_44
138.6
MONOCYTES_45
138.3
MONOCYTES_46
138.2
MONOCYTES_47
138.0
MONOCYTES_48
137.8
MONOCYTES_49
137.7
MONOCYTES_50
136.8
MONOCYTES_51
136.6
MONOCYTES_52
136.0
MONOCYTES_53
136.0
MONOCYTES_54
135.6
MONOCYTES_55
134.7
MONOCYTES_56
133.8
MONOCYTES_57
132.8
MONOCYTES_58
131.8
MONOCYTES_59
131.7
MONOCYTES_60
131.2
MONOCYTES_61
131.2
MONOCYTES_62
130.3
MONOCYTES_63
129.7
MONOCYTES_64
128.8
MONOCYTES_65
128.7
MONOCYTES_66
127.7
MONOCYTES_67
127.7
MONOCYTES_68
127.5
MONOCYTES_69
127.3
MONOCYTES_70
125.1
MONOCYTES_71
124.3
MONOCYTES_72
123.8
MONOCYTES_73
122.5
MONOCYTES_74
122.2
MONOCYTES_75
122.1
MONOCYTES_76
121.9
MONOCYTES_77
121.3
MONOCYTES_78
119.1
MONOCYTES_79
119.0
MONOCYTES_80
118.8
MONOCYTES_81
118.5
MONOCYTES_82
118.2
MONOCYTES_83
118.2
MONOCYTES_84
118.0
MONOCYTES_85
117.5
MONOCYTES_86
117.3
MONOCYTES_87
116.4
MONOCYTES_88
115.5
MONOCYTES_89
114.7
MONOCYTES_90
109.5
MONOCYTES_91
109.3
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Non-classical monocyte TPM: 326.9
Samples: 90
Max TPM: 457.9
Min TPM: 254.5
M2_1
457.9
M2_2
439.9
M2_3
419.9
M2_4
418.8
M2_5
417.6
M2_6
408.2
M2_7
406.8
M2_8
400.0
M2_9
392.7
M2_10
392.0
M2_11
388.8
M2_12
388.3
M2_13
378.2
M2_14
374.7
M2_15
369.3
M2_16
361.4
M2_17
361.3
M2_18
360.1
M2_19
358.6
M2_20
356.5
M2_21
356.5
M2_22
355.8
M2_23
353.1
M2_24
351.7
M2_25
348.9
M2_26
348.5
M2_27
348.0
M2_28
345.9
M2_29
345.9
M2_30
345.6
M2_31
341.9
M2_32
340.7
M2_33
339.9
M2_34
338.9
M2_35
338.3
M2_36
336.7
M2_37
336.5
M2_38
334.4
M2_39
334.0
M2_40
333.0
M2_41
326.7
M2_42
320.0
M2_43
319.5
M2_44
319.3
M2_45
318.7
M2_46
317.3
M2_47
316.9
M2_48
311.6
M2_49
310.9
M2_50
310.4
M2_51
310.4
M2_52
310.1
M2_53
308.9
M2_54
307.7
M2_55
305.7
M2_56
303.2
M2_57
301.9
M2_58
301.2
M2_59
300.7
M2_60
300.1
M2_61
299.5
M2_62
298.5
M2_63
297.9
M2_64
296.7
M2_65
296.4
M2_66
296.3
M2_67
295.9
M2_68
293.6
M2_69
292.9
M2_70
292.9
M2_71
291.3
M2_72
290.7
M2_73
290.5
M2_74
287.4
M2_75
287.3
M2_76
286.6
M2_77
282.4
M2_78
280.2
M2_79
279.5
M2_80
275.5
M2_81
275.2
M2_82
273.8
M2_83
273.5
M2_84
273.5
M2_85
272.7
M2_86
260.5
M2_87
260.2
M2_88
260.0
M2_89
257.2
M2_90
254.5
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