BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA Brain:36.6 nTPM
GTEx:26.5 nTPM
FANTOM5:2.5 Scaled Tags Per Million
Macaque:28.8 nTPM
Mouse:53.9 nTPM
Rat:37.2 nTPM
Pig:29.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.9
2586 Male, age 75, left hemisphere 48.7
2019 Male, age 18, unknown 41.5
2666 Male, age 74, left hemisphere 34.9
1827 Male, age 72, unknown 34.5
2219 Male, age 76, both hemispheres 30.2
2828 Female, age 72, unknown 30.2
2411 Female, age 72, unknown 28.7
1833 Male, age 53, unknown 28.6
1830 Male, age 51, unknown 26.2
1870 Female, age 42, unknown 25.5
Dorsal raphe nucleus
nTPM: 33.5
1828 Male, age 53, unknown 39.7
2298 Female, age 72, unknown 37.4
2047 Male, age 72, unknown 33.3
2016 Female, age 72, unknown 30.6
2750 Male, age 76, both hemispheres 26.4
Inferior colliculus
nTPM: 29.7
1890 Male, age 53, unknown 33.7
2097 Female, age 72, unknown 30.8
2849 Male, age 72, unknown 28.4
1848 Female, age 42, unknown 26.1
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 31.6
1795 Male, age 51, unknown 39.3
2502 Female, age 75, unknown 31.3
1947 Male, age 18, unknown 24.2
Periaquaductal grey, dorsal
nTPM: 31.6
2850 Male, age 76, both hemispheres 35.5
1831 Male, age 72, unknown 33.7
2464 Female, age 72, unknown 28.7
1840 Male, age 53, unknown 28.5
Periaquaductal grey, lateral
nTPM: 32.4
2272 Male, age 74, both hemispheres 39.1
2140 Male, age 76, both hemispheres 29.1
2053 Male, age 18, unknown 28.9
Pretectal area
nTPM: 36.6
2007 Male, age 72, unknown 47.4
1816 Male, age 51, unknown 45.6
1817 Female, age 42, unknown 43.0
1944 Female, age 72, unknown 39.1
1815 Male, age 53, unknown 38.0
2407 Male, age 75, both hemispheres 35.5
2273 Male, age 74, both hemispheres 34.6
2667 Female, age 75, unknown 33.0
2224 Female, age 72, unknown 30.0
2825 Male, age 18, unknown 28.6
2316 Male, age 76, right hemisphere 28.1
Red nucleus
nTPM: 30.6
2785 Male, age 18, unknown 40.9
2584 Male, age 75, left hemisphere 38.6
2588 Male, age 74, left hemisphere 34.2
2725 Female, age 75, unknown 32.4
2769 Male, age 72, unknown 30.2
2823 Male, age 76, right hemisphere 29.5
2227 Male, age 72, unknown 29.0
1865 Male, age 51, unknown 27.4
1821 Female, age 72, unknown 27.3
2503 Female, age 72, unknown 26.4
1904 Male, age 53, unknown 26.1
1954 Female, age 42, unknown 25.2
Substantia nigra
nTPM: 32.8
1916 Female, age 42, unknown 38.9
2583 Male, age 75, right hemisphere 36.8
2665 Male, age 74, both hemispheres 36.2
1889 Female, age 72, unknown 36.1
1851 Male, age 51, unknown 35.8
1941 Male, age 53, unknown 31.4
2699 Male, age 18, unknown 30.7
2409 Female, age 72, unknown 29.9
2590 Female, age 75, unknown 29.8
2241 Male, age 72, unknown 22.7
Superior colliculus
nTPM: 31.9
2664 Male, age 75, both hemispheres 38.6
2668 Female, age 75, unknown 34.9
2087 Female, age 72, unknown 34.5
2261 Male, age 18, unknown 34.4
1796 Male, age 53, unknown 34.0
1995 Male, age 72, unknown 32.6
1913 Female, age 42, unknown 28.2
2587 Male, age 74, left hemisphere 28.0
1839 Male, age 51, unknown 27.5
1895 Male, age 76, right hemisphere 26.2
Ventral tegmental area
nTPM: 27.8
1915 Female, age 42, unknown 30.3
2218 Male, age 76, both hemispheres 30.3
2223 Female, age 72, unknown 27.9
2410 Female, age 72, unknown 26.9
2021 Male, age 53, unknown 26.8
1942 Male, age 51, unknown 24.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.5
Samples: 183

Max nTPM: 43.8
Min nTPM: 15.1
Std nTPM: 5.8
Median nTPM: 25.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 43.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 43.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 41.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 41.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 41.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 40.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 40.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 38.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 37.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 37.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 37.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 28.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 16.7
Samples: 1

Max nTPM: 16.7
Min nTPM: 16.7
Sample A 16.7
Midbrain
nTPM: 19.1
Samples: 1

Max nTPM: 19.1
Min nTPM: 19.1
Sample A 19.1
Superior colliculi
nTPM: 28.8
Samples: 1

Max nTPM: 28.8
Min nTPM: 28.8
Sample A 28.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.6
Samples: 3

Max nTPM: 25.0
Min nTPM: 21.5
Sample A Female 25.0
Sample B Female 21.5
Sample C Male 24.3
Midbrain
nTPM: 28.1
Samples: 3

Max nTPM: 32.5
Min nTPM: 21.1
Sample B Female 21.1
Sample C Male 32.5
Sample D Male 30.7
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 26.0
Min nTPM: 21.8
Sample B Female 21.8
Sample C Male 26.0
Sample D Male 23.4
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 31.0
Min nTPM: 27.8
Sample A Female 31.0
Sample B Female 29.9
Sample C Male 30.5
Sample D Male 27.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 60.8
Min nTPM: 49.8
Sample A 51.2
Sample B 60.8
Sample C 53.7
Sample D 49.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 37.2
Rat sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 39.9
Min nTPM: 33.7
Sample A 39.9
Sample A 37.9
Sample A 37.3
Sample A 33.7

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