A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.8
nTPM
Monaco:
44.7
nTPM
Schmiedel:
78.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
HPA sample
nTPM
NK-cell nTPM: 12.8
Samples: 6
Max nTPM: 32.1
Min nTPM: 5.6
P10809_1013
5.6
P10809_1033
8.2
P10809_1052
5.9
P10809_1071
13.2
P10809_1093
32.1
P10809_1103
11.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.7
Monaco sample
nTPM
NK-cell nTPM: 44.7
Samples: 4
Max nTPM: 52.3
Min nTPM: 35.7
RHH5316_R3683
45.5
RHH5224_R3596
52.3
RHH5253_R3625
45.2
RHH5282_R3654
35.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.8
Schmiedel sample id
TPM
NK-cell TPM: 78.8
Samples: 90
Max TPM: 107.2
Min TPM: 53.5
NK_1
107.2
NK_2
103.2
NK_3
98.7
NK_4
97.7
NK_5
96.5
NK_6
95.0
NK_7
94.9
NK_8
94.2
NK_9
94.1
NK_10
93.7
NK_11
93.1
NK_12
92.6
NK_13
92.2
NK_14
90.7
NK_15
90.2
NK_16
89.4
NK_17
89.3
NK_18
88.3
NK_19
88.2
NK_20
87.9
NK_21
87.3
NK_22
87.2
NK_23
87.1
NK_24
86.4
NK_25
86.3
NK_26
86.0
NK_27
84.3
NK_28
84.1
NK_29
83.9
NK_30
83.8
NK_31
83.6
NK_32
82.4
NK_33
82.0
NK_34
81.8
NK_35
81.7
NK_36
81.7
NK_37
81.0
NK_38
79.7
NK_39
79.4
NK_40
79.0
NK_41
78.5
NK_42
78.1
NK_43
77.2
NK_44
77.0
NK_45
76.8
NK_46
76.7
NK_47
76.6
NK_48
76.2
NK_49
75.9
NK_50
75.7
NK_51
75.6
NK_52
75.3
NK_53
75.1
NK_54
74.5
NK_55
74.3
NK_56
74.1
NK_57
73.8
NK_58
73.4
NK_59
73.3
NK_60
73.2
NK_61
73.2
NK_62
73.0
NK_63
72.8
NK_64
72.7
NK_65
72.6
NK_66
72.2
NK_67
71.4
NK_68
71.2
NK_69
71.0
NK_70
70.9
NK_71
70.8
NK_72
69.9
NK_73
69.8
NK_74
69.5
NK_75
69.5
NK_76
69.2
NK_77
68.9
NK_78
68.7
NK_79
68.3
NK_80
66.7
NK_81
66.7
NK_82
66.7
NK_83
65.2
NK_84
64.8
NK_85
64.7
NK_86
64.3
NK_87
63.8
NK_88
60.7
NK_89
54.7
NK_90
53.5
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