A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.3
nTPM
Monaco:
15.1
nTPM
Schmiedel:
35.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.3
HPA sample
nTPM
Classical monocyte nTPM: 1.8
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.9
P10809_1003
0.9
P10809_1020
1.7
P10809_1039
1.0
P10809_1058
2.5
P10809_1080
3.2
P10809_1107
1.4
Intermediate monocyte nTPM: 1.0
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.2
P10809_1004
1.3
P10809_1023
0.7
P10809_1042
1.6
P10809_1061
0.2
P10809_1081
2.0
P10809_1108
0.3
Non-classical monocyte nTPM: 3.3
Samples: 5
Max nTPM: 9.7
Min nTPM: 0.5
P10809_1005
2.0
P10809_1053
1.1
P10809_1072
9.7
P10809_1082
3.1
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.1
Monaco sample
nTPM
Classical monocyte nTPM: 14.8
Samples: 4
Max nTPM: 19.4
Min nTPM: 11.0
RHH5313_R3680
13.8
RHH5221_R3593
11.0
RHH5250_R3622
19.4
RHH5279_R3651
14.8
Intermediate monocyte nTPM: 11.9
Samples: 4
Max nTPM: 13.3
Min nTPM: 9.2
RHH5314_R3681
13.3
RHH5222_R3594
9.2
RHH5251_R3623
11.8
RHH5280_R3652
13.1
Non-classical monocyte nTPM: 15.1
Samples: 4
Max nTPM: 16.3
Min nTPM: 12.4
RHH5315_R3682
12.4
RHH5223_R3595
15.7
RHH5252_R3624
15.9
RHH5281_R3653
16.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.1
Schmiedel sample id
TPM
Classical monocyte TPM: 24.5
Samples: 91
Max TPM: 31.9
Min TPM: 18.2
MONOCYTES_1
31.9
MONOCYTES_2
31.3
MONOCYTES_3
31.2
MONOCYTES_4
30.4
MONOCYTES_5
30.1
MONOCYTES_6
29.9
MONOCYTES_7
29.2
MONOCYTES_8
29.0
MONOCYTES_9
28.3
MONOCYTES_10
28.1
MONOCYTES_11
28.0
MONOCYTES_12
27.9
MONOCYTES_13
27.9
MONOCYTES_14
27.7
MONOCYTES_15
27.7
MONOCYTES_16
27.7
MONOCYTES_17
27.5
MONOCYTES_18
27.3
MONOCYTES_19
27.1
MONOCYTES_20
27.0
MONOCYTES_21
26.7
MONOCYTES_22
26.6
MONOCYTES_23
26.6
MONOCYTES_24
26.5
MONOCYTES_25
26.4
MONOCYTES_26
26.3
MONOCYTES_27
26.3
MONOCYTES_28
26.3
MONOCYTES_29
26.2
MONOCYTES_30
26.2
MONOCYTES_31
26.2
MONOCYTES_32
26.0
MONOCYTES_33
25.8
MONOCYTES_34
25.8
MONOCYTES_35
25.7
MONOCYTES_36
25.6
MONOCYTES_37
25.5
MONOCYTES_38
25.5
MONOCYTES_39
25.5
MONOCYTES_40
25.4
MONOCYTES_41
24.8
MONOCYTES_42
24.8
MONOCYTES_43
24.8
MONOCYTES_44
24.7
MONOCYTES_45
24.7
MONOCYTES_46
24.6
MONOCYTES_47
24.5
MONOCYTES_48
24.4
MONOCYTES_49
24.3
MONOCYTES_50
24.2
MONOCYTES_51
24.2
MONOCYTES_52
24.1
MONOCYTES_53
24.0
MONOCYTES_54
23.9
MONOCYTES_55
23.7
MONOCYTES_56
23.6
MONOCYTES_57
23.6
MONOCYTES_58
23.3
MONOCYTES_59
23.1
MONOCYTES_60
22.9
MONOCYTES_61
22.7
MONOCYTES_62
22.7
MONOCYTES_63
22.7
MONOCYTES_64
22.5
MONOCYTES_65
22.5
MONOCYTES_66
22.4
MONOCYTES_67
22.3
MONOCYTES_68
22.1
MONOCYTES_69
22.0
MONOCYTES_70
21.9
MONOCYTES_71
21.9
MONOCYTES_72
21.9
MONOCYTES_73
21.7
MONOCYTES_74
21.7
MONOCYTES_75
21.6
MONOCYTES_76
21.4
MONOCYTES_77
21.4
MONOCYTES_78
21.4
MONOCYTES_79
21.3
MONOCYTES_80
21.0
MONOCYTES_81
20.8
MONOCYTES_82
20.6
MONOCYTES_83
20.4
MONOCYTES_84
19.6
MONOCYTES_85
19.5
MONOCYTES_86
19.1
MONOCYTES_87
18.6
MONOCYTES_88
18.5
MONOCYTES_89
18.4
MONOCYTES_90
18.3
MONOCYTES_91
18.2
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Non-classical monocyte TPM: 35.1
Samples: 90
Max TPM: 53.2
Min TPM: 17.0
M2_1
53.2
M2_2
52.1
M2_3
51.5
M2_4
49.3
M2_5
49.0
M2_6
48.7
M2_7
48.3
M2_8
48.0
M2_9
47.2
M2_10
42.6
M2_11
42.4
M2_12
42.2
M2_13
41.5
M2_14
41.0
M2_15
40.9
M2_16
40.6
M2_17
40.5
M2_18
39.4
M2_19
39.3
M2_20
39.2
M2_21
38.9
M2_22
38.8
M2_23
38.7
M2_24
38.0
M2_25
37.7
M2_26
37.6
M2_27
37.5
M2_28
37.5
M2_29
37.5
M2_30
37.4
M2_31
37.4
M2_32
36.9
M2_33
36.8
M2_34
36.6
M2_35
36.2
M2_36
35.9
M2_37
35.7
M2_38
35.6
M2_39
35.6
M2_40
35.6
M2_41
35.5
M2_42
35.4
M2_43
35.3
M2_44
35.2
M2_45
34.5
M2_46
34.4
M2_47
34.4
M2_48
34.2
M2_49
33.7
M2_50
33.6
M2_51
33.6
M2_52
32.9
M2_53
32.8
M2_54
32.7
M2_55
32.4
M2_56
32.4
M2_57
32.1
M2_58
31.9
M2_59
31.7
M2_60
31.7
M2_61
31.6
M2_62
31.4
M2_63
31.3
M2_64
31.2
M2_65
31.1
M2_66
31.1
M2_67
30.9
M2_68
30.8
M2_69
30.3
M2_70
29.9
M2_71
29.9
M2_72
29.8
M2_73
29.4
M2_74
29.4
M2_75
29.2
M2_76
29.1
M2_77
29.1
M2_78
29.1
M2_79
28.9
M2_80
28.7
M2_81
28.6
M2_82
28.1
M2_83
26.5
M2_84
26.2
M2_85
26.1
M2_86
26.0
M2_87
25.5
M2_88
23.2
M2_89
21.0
M2_90
17.0
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