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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:467.0 nTPM
HPA:316.6 nTPM
GTEx:467.0 nTPM
FANTOM5:377.1 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003315Antibody HPA064736Antibody CAB017118Antibody CAB068930
Glandular cells Not detectedMediumNot detectedNot detected








SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.6
overview
Male, age 65
Small intestine sample 232
nTPM: 169.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 320.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 377.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 398.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

467.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 467.0
Samples: 207

Max nTPM: 2066.3
Min nTPM: 51.0
Std nTPM: 338.5
Median nTPM: 346.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2066.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1501.5
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1488.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1460.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1307.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1304.4
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1285.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1285.3
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1204.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1186.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1180.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1159.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1156.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1087.7
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1085.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1077.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1035.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1034.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1015.0
GTEX-1192X-2526-SM-59868 50-59 years, male 1008.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 966.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 961.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 957.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 930.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 916.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 915.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 888.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 857.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 819.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 810.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 808.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 800.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 798.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 785.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 774.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 758.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 757.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 757.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 757.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 737.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 733.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 716.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 715.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 696.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 693.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 689.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 687.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 665.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 662.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 655.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 655.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 634.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 630.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 630.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 624.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 616.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 580.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 577.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 570.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 565.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 553.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 553.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 535.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 528.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 526.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 509.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 505.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 500.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 493.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 491.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 490.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 489.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 489.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 483.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 483.2
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 483.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 474.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 452.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 441.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 440.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 423.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 418.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 418.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 398.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 397.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 397.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 394.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 387.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 386.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 379.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 378.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 377.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 371.2
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 370.5
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 368.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 367.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 363.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 363.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 360.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 359.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 359.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 356.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 352.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 346.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 345.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 341.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 336.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 334.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 322.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 321.7
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 321.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 321.2
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 320.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 320.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 310.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 305.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 305.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 300.7
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 299.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 294.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 291.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 291.3
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 290.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 290.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 290.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 288.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 284.1
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 283.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 276.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 275.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 274.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 274.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 273.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 272.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 269.6
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 268.1
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 264.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 264.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 263.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 260.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 259.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 258.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 246.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 243.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 243.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 241.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 237.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 234.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 233.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 233.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 233.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 230.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 229.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 229.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 229.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 224.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 223.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 221.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 220.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 219.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 217.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 216.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 216.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 211.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 209.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 207.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 205.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 203.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 200.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 198.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 197.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 191.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 188.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 188.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 187.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 186.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 182.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 181.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 173.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 172.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 171.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 171.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 170.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 168.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 168.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 164.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 159.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 157.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 156.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 151.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 150.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 148.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 147.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 146.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 144.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 132.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 130.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 129.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 129.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 123.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 122.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 111.0
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 106.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 100.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 99.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 69.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 51.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

377.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 377.1
FF:10024-101D6 15,40,85 years, mixed 377.1

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