A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
20.8
nTPM
Schmiedel:
12.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
Classical monocyte nTPM: 8.8
Samples: 6
Max nTPM: 11.7
Min nTPM: 6.4
P10809_1003
6.4
P10809_1020
9.5
P10809_1039
6.9
P10809_1058
9.8
P10809_1080
8.7
P10809_1107
11.7
Intermediate monocyte nTPM: 6.9
Samples: 6
Max nTPM: 10.4
Min nTPM: 3.6
P10809_1004
5.9
P10809_1023
7.9
P10809_1042
3.6
P10809_1061
5.2
P10809_1081
8.5
P10809_1108
10.4
Non-classical monocyte nTPM: 10.3
Samples: 5
Max nTPM: 22.4
Min nTPM: 3.3
P10809_1005
3.3
P10809_1053
8.8
P10809_1072
22.4
P10809_1082
6.8
P10809_1109
10.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.8
Monaco sample
nTPM
Classical monocyte nTPM: 20.8
Samples: 4
Max nTPM: 24.5
Min nTPM: 16.0
RHH5313_R3680
22.4
RHH5221_R3593
16.0
RHH5250_R3622
24.5
RHH5279_R3651
20.4
Intermediate monocyte nTPM: 11.6
Samples: 4
Max nTPM: 15.2
Min nTPM: 7.5
RHH5314_R3681
15.2
RHH5222_R3594
10.3
RHH5251_R3623
13.3
RHH5280_R3652
7.5
Non-classical monocyte nTPM: 15.4
Samples: 4
Max nTPM: 24.3
Min nTPM: 3.9
RHH5315_R3682
14.1
RHH5223_R3595
3.9
RHH5252_R3624
24.3
RHH5281_R3653
19.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
Schmiedel sample id
TPM
Classical monocyte TPM: 12.7
Samples: 91
Max TPM: 18.3
Min TPM: 6.6
MONOCYTES_1
18.3
MONOCYTES_2
17.1
MONOCYTES_3
17.0
MONOCYTES_4
17.0
MONOCYTES_5
16.8
MONOCYTES_6
16.3
MONOCYTES_7
16.3
MONOCYTES_8
16.0
MONOCYTES_9
15.9
MONOCYTES_10
15.9
MONOCYTES_11
15.8
MONOCYTES_12
15.5
MONOCYTES_13
15.5
MONOCYTES_14
15.3
MONOCYTES_15
15.3
MONOCYTES_16
15.2
MONOCYTES_17
15.2
MONOCYTES_18
15.2
MONOCYTES_19
14.8
MONOCYTES_20
14.7
MONOCYTES_21
14.5
MONOCYTES_22
14.5
MONOCYTES_23
14.5
MONOCYTES_24
14.4
MONOCYTES_25
14.3
MONOCYTES_26
14.3
MONOCYTES_27
14.2
MONOCYTES_28
14.1
MONOCYTES_29
13.8
MONOCYTES_30
13.8
MONOCYTES_31
13.7
MONOCYTES_32
13.6
MONOCYTES_33
13.5
MONOCYTES_34
13.5
MONOCYTES_35
13.4
MONOCYTES_36
13.4
MONOCYTES_37
13.4
MONOCYTES_38
13.3
MONOCYTES_39
13.3
MONOCYTES_40
13.2
MONOCYTES_41
13.1
MONOCYTES_42
13.0
MONOCYTES_43
12.9
MONOCYTES_44
12.9
MONOCYTES_45
12.9
MONOCYTES_46
12.8
MONOCYTES_47
12.8
MONOCYTES_48
12.7
MONOCYTES_49
12.6
MONOCYTES_50
12.4
MONOCYTES_51
12.4
MONOCYTES_52
12.3
MONOCYTES_53
12.1
MONOCYTES_54
11.9
MONOCYTES_55
11.8
MONOCYTES_56
11.7
MONOCYTES_57
11.7
MONOCYTES_58
11.6
MONOCYTES_59
11.5
MONOCYTES_60
11.4
MONOCYTES_61
11.4
MONOCYTES_62
11.4
MONOCYTES_63
11.3
MONOCYTES_64
11.2
MONOCYTES_65
11.2
MONOCYTES_66
11.1
MONOCYTES_67
11.1
MONOCYTES_68
11.1
MONOCYTES_69
11.1
MONOCYTES_70
11.0
MONOCYTES_71
11.0
MONOCYTES_72
10.9
MONOCYTES_73
10.8
MONOCYTES_74
10.7
MONOCYTES_75
10.4
MONOCYTES_76
10.4
MONOCYTES_77
10.4
MONOCYTES_78
10.3
MONOCYTES_79
10.1
MONOCYTES_80
9.7
MONOCYTES_81
9.7
MONOCYTES_82
9.6
MONOCYTES_83
9.6
MONOCYTES_84
9.6
MONOCYTES_85
9.5
MONOCYTES_86
9.5
MONOCYTES_87
9.3
MONOCYTES_88
9.2
MONOCYTES_89
8.8
MONOCYTES_90
8.4
MONOCYTES_91
6.6
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Non-classical monocyte TPM: 10.0
Samples: 90
Max TPM: 18.6
Min TPM: 6.4
M2_1
18.6
M2_2
14.5
M2_3
14.5
M2_4
14.3
M2_5
14.1
M2_6
13.9
M2_7
13.5
M2_8
12.9
M2_9
12.6
M2_10
12.4
M2_11
12.3
M2_12
12.0
M2_13
11.9
M2_14
11.8
M2_15
11.7
M2_16
11.7
M2_17
11.6
M2_18
11.6
M2_19
11.4
M2_20
11.4
M2_21
11.3
M2_22
11.3
M2_23
11.3
M2_24
11.1
M2_25
11.1
M2_26
11.0
M2_27
11.0
M2_28
10.9
M2_29
10.9
M2_30
10.9
M2_31
10.7
M2_32
10.7
M2_33
10.7
M2_34
10.6
M2_35
10.6
M2_36
10.5
M2_37
10.5
M2_38
10.4
M2_39
10.4
M2_40
10.2
M2_41
10.1
M2_42
10.0
M2_43
9.9
M2_44
9.8
M2_45
9.7
M2_46
9.7
M2_47
9.7
M2_48
9.6
M2_49
9.6
M2_50
9.6
M2_51
9.5
M2_52
9.4
M2_53
9.4
M2_54
9.3
M2_55
9.2
M2_56
9.1
M2_57
8.9
M2_58
8.8
M2_59
8.8
M2_60
8.8
M2_61
8.8
M2_62
8.7
M2_63
8.7
M2_64
8.6
M2_65
8.5
M2_66
8.5
M2_67
8.4
M2_68
8.2
M2_69
8.2
M2_70
8.2
M2_71
8.2
M2_72
8.2
M2_73
7.9
M2_74
7.9
M2_75
7.9
M2_76
7.9
M2_77
7.8
M2_78
7.7
M2_79
7.7
M2_80
7.3
M2_81
7.2
M2_82
7.1
M2_83
7.1
M2_84
7.1
M2_85
7.0
M2_86
6.9
M2_87
6.9
M2_88
6.8
M2_89
6.6
M2_90
6.4
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