A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
142.9
nTPM
Monaco:
122.6
nTPM
Schmiedel:
28.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.9
HPA sample
nTPM
Classical monocyte nTPM: 132.2
Samples: 6
Max nTPM: 169.0
Min nTPM: 95.4
P10809_1003
95.4
P10809_1020
149.1
P10809_1039
161.4
P10809_1058
109.8
P10809_1080
108.2
P10809_1107
169.0
Intermediate monocyte nTPM: 142.9
Samples: 6
Max nTPM: 213.8
Min nTPM: 100.7
P10809_1004
100.7
P10809_1023
154.9
P10809_1042
170.6
P10809_1061
110.2
P10809_1081
107.4
P10809_1108
213.8
Non-classical monocyte nTPM: 108.3
Samples: 5
Max nTPM: 142.5
Min nTPM: 74.6
P10809_1005
114.8
P10809_1053
122.6
P10809_1072
74.6
P10809_1082
87.2
P10809_1109
142.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.6
Monaco sample
nTPM
Classical monocyte nTPM: 110.9
Samples: 4
Max nTPM: 126.5
Min nTPM: 73.6
RHH5313_R3680
117.1
RHH5221_R3593
73.6
RHH5250_R3622
126.5
RHH5279_R3651
126.3
Intermediate monocyte nTPM: 122.3
Samples: 4
Max nTPM: 161.9
Min nTPM: 87.4
RHH5314_R3681
161.9
RHH5222_R3594
118.9
RHH5251_R3623
87.4
RHH5280_R3652
120.8
Non-classical monocyte nTPM: 122.5
Samples: 4
Max nTPM: 143.0
Min nTPM: 104.4
RHH5315_R3682
143.0
RHH5223_R3595
114.9
RHH5252_R3624
104.4
RHH5281_R3653
127.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.0
Schmiedel sample id
TPM
Classical monocyte TPM: 27.9
Samples: 91
Max TPM: 40.2
Min TPM: 14.2
MONOCYTES_1
40.2
MONOCYTES_2
37.2
MONOCYTES_3
35.8
MONOCYTES_4
35.4
MONOCYTES_5
35.3
MONOCYTES_6
35.3
MONOCYTES_7
35.1
MONOCYTES_8
34.7
MONOCYTES_9
34.6
MONOCYTES_10
34.5
MONOCYTES_11
34.5
MONOCYTES_12
33.7
MONOCYTES_13
33.6
MONOCYTES_14
33.4
MONOCYTES_15
32.7
MONOCYTES_16
32.3
MONOCYTES_17
32.2
MONOCYTES_18
32.1
MONOCYTES_19
31.9
MONOCYTES_20
31.5
MONOCYTES_21
31.4
MONOCYTES_22
31.3
MONOCYTES_23
31.2
MONOCYTES_24
31.0
MONOCYTES_25
30.9
MONOCYTES_26
30.8
MONOCYTES_27
30.8
MONOCYTES_28
30.3
MONOCYTES_29
30.2
MONOCYTES_30
30.1
MONOCYTES_31
29.9
MONOCYTES_32
29.6
MONOCYTES_33
29.6
MONOCYTES_34
29.6
MONOCYTES_35
29.6
MONOCYTES_36
29.4
MONOCYTES_37
29.4
MONOCYTES_38
29.2
MONOCYTES_39
29.2
MONOCYTES_40
28.8
MONOCYTES_41
28.7
MONOCYTES_42
28.5
MONOCYTES_43
28.5
MONOCYTES_44
28.4
MONOCYTES_45
28.1
MONOCYTES_46
28.1
MONOCYTES_47
28.0
MONOCYTES_48
28.0
MONOCYTES_49
27.9
MONOCYTES_50
27.9
MONOCYTES_51
27.7
MONOCYTES_52
27.6
MONOCYTES_53
27.5
MONOCYTES_54
27.2
MONOCYTES_55
26.9
MONOCYTES_56
26.4
MONOCYTES_57
26.3
MONOCYTES_58
26.3
MONOCYTES_59
26.3
MONOCYTES_60
26.2
MONOCYTES_61
25.9
MONOCYTES_62
25.7
MONOCYTES_63
25.6
MONOCYTES_64
25.4
MONOCYTES_65
25.2
MONOCYTES_66
25.1
MONOCYTES_67
25.0
MONOCYTES_68
24.9
MONOCYTES_69
24.3
MONOCYTES_70
24.1
MONOCYTES_71
23.9
MONOCYTES_72
23.8
MONOCYTES_73
23.8
MONOCYTES_74
23.5
MONOCYTES_75
23.3
MONOCYTES_76
23.2
MONOCYTES_77
22.3
MONOCYTES_78
22.3
MONOCYTES_79
22.1
MONOCYTES_80
21.7
MONOCYTES_81
21.3
MONOCYTES_82
21.1
MONOCYTES_83
20.9
MONOCYTES_84
20.8
MONOCYTES_85
20.7
MONOCYTES_86
20.5
MONOCYTES_87
20.1
MONOCYTES_88
20.0
MONOCYTES_89
19.7
MONOCYTES_90
18.8
MONOCYTES_91
14.2
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Non-classical monocyte TPM: 28.0
Samples: 90
Max TPM: 42.9
Min TPM: 13.2
M2_1
42.9
M2_2
40.2
M2_3
39.7
M2_4
38.5
M2_5
38.3
M2_6
37.9
M2_7
37.9
M2_8
37.7
M2_9
37.5
M2_10
36.5
M2_11
36.4
M2_12
36.3
M2_13
35.8
M2_14
35.5
M2_15
35.0
M2_16
34.8
M2_17
34.3
M2_18
34.3
M2_19
34.0
M2_20
33.6
M2_21
33.6
M2_22
33.5
M2_23
33.1
M2_24
33.0
M2_25
31.9
M2_26
31.8
M2_27
31.8
M2_28
31.5
M2_29
31.2
M2_30
31.1
M2_31
31.1
M2_32
30.8
M2_33
30.7
M2_34
30.6
M2_35
30.6
M2_36
30.6
M2_37
29.9
M2_38
29.8
M2_39
29.7
M2_40
29.7
M2_41
29.6
M2_42
29.5
M2_43
29.0
M2_44
28.8
M2_45
28.6
M2_46
28.6
M2_47
28.5
M2_48
28.4
M2_49
27.7
M2_50
27.3
M2_51
27.2
M2_52
26.7
M2_53
26.6
M2_54
26.4
M2_55
26.4
M2_56
26.3
M2_57
25.7
M2_58
25.6
M2_59
25.5
M2_60
24.6
M2_61
24.5
M2_62
23.8
M2_63
23.6
M2_64
23.5
M2_65
23.4
M2_66
23.4
M2_67
23.0
M2_68
22.4
M2_69
22.3
M2_70
22.0
M2_71
21.7
M2_72
21.7
M2_73
21.6
M2_74
21.6
M2_75
21.5
M2_76
21.5
M2_77
20.9
M2_78
20.5
M2_79
19.9
M2_80
19.8
M2_81
19.7
M2_82
18.5
M2_83
17.4
M2_84
17.4
M2_85
16.8
M2_86
16.8
M2_87
16.6
M2_88
16.3
M2_89
16.0
M2_90
13.2
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