A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
120.7
nTPM
Monaco:
863.5
nTPM
Schmiedel:
966.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.7
HPA sample
nTPM
Memory B-cell nTPM: 97.9
Samples: 6
Max nTPM: 126.8
Min nTPM: 82.9
P10809_1017
126.8
P10809_1025
93.1
P10809_1044
112.0
P10809_1063
82.9
P10809_1092
88.6
P10809_1105
83.8
Naive B-cell nTPM: 120.7
Samples: 6
Max nTPM: 132.3
Min nTPM: 85.4
P10809_1011
127.9
P10809_1029
131.0
P10809_1048
85.4
P10809_1067
116.2
P10809_1091
132.3
P10809_1104
131.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
863.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 556.9
Samples: 4
Max nTPM: 695.3
Min nTPM: 458.1
RHH5310_R3677
471.7
RHH5218_R3590
602.4
RHH5247_R3619
458.1
RHH5276_R3648
695.3
Naive B-cell nTPM: 863.5
Samples: 4
Max nTPM: 984.6
Min nTPM: 731.8
RHH5308_R3675
731.8
RHH5216_R3588
843.5
RHH5245_R3617
984.6
RHH5274_R3646
894.1
Non-switched memory B-cell nTPM: 573.3
Samples: 4
Max nTPM: 674.3
Min nTPM: 481.6
RHH5309_R3676
481.6
RHH5217_R3589
674.3
RHH5246_R3618
594.8
RHH5275_R3647
542.3
Plasmablast nTPM: 5.9
Samples: 4
Max nTPM: 13.6
Min nTPM: 1.4
RHH5312_R3679
1.4
RHH5220_R3592
5.4
RHH5249_R3621
13.6
RHH5278_R3650
3.1
Switched memory B-cell nTPM: 425.7
Samples: 4
Max nTPM: 477.2
Min nTPM: 382.4
RHH5311_R3678
403.0
RHH5219_R3591
382.4
RHH5248_R3620
477.2
RHH5277_R3649
440.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
966.2
Schmiedel sample id
TPM
Naive B-cell TPM: 966.2
Samples: 91
Max TPM: 1635.0
Min TPM: 425.4
B_CELL_NAIVE_1
1635.0
B_CELL_NAIVE_2
1422.6
B_CELL_NAIVE_3
1353.5
B_CELL_NAIVE_4
1297.8
B_CELL_NAIVE_5
1223.3
B_CELL_NAIVE_6
1213.1
B_CELL_NAIVE_7
1211.5
B_CELL_NAIVE_8
1162.8
B_CELL_NAIVE_9
1157.7
B_CELL_NAIVE_10
1154.3
B_CELL_NAIVE_11
1145.6
B_CELL_NAIVE_12
1129.1
B_CELL_NAIVE_13
1119.3
B_CELL_NAIVE_14
1119.0
B_CELL_NAIVE_15
1117.0
B_CELL_NAIVE_16
1115.7
B_CELL_NAIVE_17
1110.2
B_CELL_NAIVE_18
1107.8
B_CELL_NAIVE_19
1106.3
B_CELL_NAIVE_20
1101.0
B_CELL_NAIVE_21
1096.0
B_CELL_NAIVE_22
1095.7
B_CELL_NAIVE_23
1095.2
B_CELL_NAIVE_24
1087.8
B_CELL_NAIVE_25
1086.1
B_CELL_NAIVE_26
1082.5
B_CELL_NAIVE_27
1079.6
B_CELL_NAIVE_28
1077.2
B_CELL_NAIVE_29
1072.0
B_CELL_NAIVE_30
1071.9
B_CELL_NAIVE_31
1066.0
B_CELL_NAIVE_32
1064.0
B_CELL_NAIVE_33
1055.1
B_CELL_NAIVE_34
1055.0
B_CELL_NAIVE_35
1051.6
B_CELL_NAIVE_36
1048.1
B_CELL_NAIVE_37
1036.8
B_CELL_NAIVE_38
1025.5
B_CELL_NAIVE_39
1020.6
B_CELL_NAIVE_40
1019.9
B_CELL_NAIVE_41
1018.6
B_CELL_NAIVE_42
1014.0
B_CELL_NAIVE_43
1010.9
B_CELL_NAIVE_44
1002.7
B_CELL_NAIVE_45
1000.6
B_CELL_NAIVE_46
996.1
B_CELL_NAIVE_47
991.0
B_CELL_NAIVE_48
989.1
B_CELL_NAIVE_49
979.2
B_CELL_NAIVE_50
978.9
B_CELL_NAIVE_51
973.7
B_CELL_NAIVE_52
961.6
B_CELL_NAIVE_53
956.4
B_CELL_NAIVE_54
956.3
B_CELL_NAIVE_55
953.9
B_CELL_NAIVE_56
945.3
B_CELL_NAIVE_57
944.9
B_CELL_NAIVE_58
943.6
B_CELL_NAIVE_59
925.5
B_CELL_NAIVE_60
923.7
B_CELL_NAIVE_61
911.5
B_CELL_NAIVE_62
909.3
B_CELL_NAIVE_63
896.7
B_CELL_NAIVE_64
895.5
B_CELL_NAIVE_65
895.2
B_CELL_NAIVE_66
888.1
B_CELL_NAIVE_67
872.4
B_CELL_NAIVE_68
863.8
B_CELL_NAIVE_69
843.1
B_CELL_NAIVE_70
818.0
B_CELL_NAIVE_71
800.7
B_CELL_NAIVE_72
793.0
B_CELL_NAIVE_73
786.9
B_CELL_NAIVE_74
770.7
B_CELL_NAIVE_75
767.6
B_CELL_NAIVE_76
758.1
B_CELL_NAIVE_77
734.5
B_CELL_NAIVE_78
731.1
B_CELL_NAIVE_79
726.7
B_CELL_NAIVE_80
723.0
B_CELL_NAIVE_81
710.6
B_CELL_NAIVE_82
706.2
B_CELL_NAIVE_83
701.1
B_CELL_NAIVE_84
683.3
B_CELL_NAIVE_85
651.5
B_CELL_NAIVE_86
625.9
B_CELL_NAIVE_87
595.1
B_CELL_NAIVE_88
584.4
B_CELL_NAIVE_89
581.3
B_CELL_NAIVE_90
517.6
B_CELL_NAIVE_91
425.4
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