A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
39.3
nTPM
Schmiedel:
54.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Classical monocyte nTPM: 1.8
Samples: 6
Max nTPM: 3.9
Min nTPM: 0.0
P10809_1003
3.5
P10809_1020
3.9
P10809_1039
0.0
P10809_1058
0.0
P10809_1080
3.3
P10809_1107
0.0
Intermediate monocyte nTPM: 1.1
Samples: 6
Max nTPM: 3.8
Min nTPM: 0.0
P10809_1004
3.8
P10809_1023
0.8
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
2.2
P10809_1108
0.0
Non-classical monocyte nTPM: 0.9
Samples: 5
Max nTPM: 2.6
Min nTPM: 0.0
P10809_1005
2.1
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
2.6
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.3
Monaco sample
nTPM
Classical monocyte nTPM: 34.4
Samples: 4
Max nTPM: 79.3
Min nTPM: 0.1
RHH5313_R3680
0.1
RHH5221_R3593
58.3
RHH5250_R3622
79.3
RHH5279_R3651
0.1
Intermediate monocyte nTPM: 28.5
Samples: 4
Max nTPM: 73.2
Min nTPM: 0.0
RHH5314_R3681
0.0
RHH5222_R3594
73.2
RHH5251_R3623
40.7
RHH5280_R3652
0.2
Non-classical monocyte nTPM: 39.4
Samples: 4
Max nTPM: 79.2
Min nTPM: 0.1
RHH5315_R3682
0.1
RHH5223_R3595
79.2
RHH5252_R3624
78.0
RHH5281_R3653
0.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.1
Schmiedel sample id
TPM
Classical monocyte TPM: 35.6
Samples: 91
Max TPM: 75.7
Min TPM: 0.0
MONOCYTES_1
75.7
MONOCYTES_2
73.6
MONOCYTES_3
69.7
MONOCYTES_4
69.3
MONOCYTES_5
69.0
MONOCYTES_6
68.9
MONOCYTES_7
66.0
MONOCYTES_8
65.7
MONOCYTES_9
65.6
MONOCYTES_10
64.6
MONOCYTES_11
64.4
MONOCYTES_12
63.7
MONOCYTES_13
63.6
MONOCYTES_14
63.6
MONOCYTES_15
63.4
MONOCYTES_16
63.3
MONOCYTES_17
63.3
MONOCYTES_18
63.3
MONOCYTES_19
63.2
MONOCYTES_20
62.7
MONOCYTES_21
62.5
MONOCYTES_22
62.5
MONOCYTES_23
62.3
MONOCYTES_24
62.2
MONOCYTES_25
62.2
MONOCYTES_26
62.2
MONOCYTES_27
61.7
MONOCYTES_28
60.5
MONOCYTES_29
60.0
MONOCYTES_30
58.8
MONOCYTES_31
58.6
MONOCYTES_32
58.2
MONOCYTES_33
58.1
MONOCYTES_34
57.9
MONOCYTES_35
57.7
MONOCYTES_36
57.0
MONOCYTES_37
56.9
MONOCYTES_38
56.8
MONOCYTES_39
56.7
MONOCYTES_40
56.3
MONOCYTES_41
56.3
MONOCYTES_42
56.0
MONOCYTES_43
54.9
MONOCYTES_44
54.8
MONOCYTES_45
54.0
MONOCYTES_46
53.6
MONOCYTES_47
53.5
MONOCYTES_48
52.9
MONOCYTES_49
51.6
MONOCYTES_50
51.1
MONOCYTES_51
49.4
MONOCYTES_52
46.1
MONOCYTES_53
45.2
MONOCYTES_54
44.8
MONOCYTES_55
0.2
MONOCYTES_56
0.1
MONOCYTES_57
0.1
MONOCYTES_58
0.1
MONOCYTES_59
0.1
MONOCYTES_60
0.1
MONOCYTES_61
0.1
MONOCYTES_62
0.1
MONOCYTES_63
0.1
MONOCYTES_64
0.1
MONOCYTES_65
0.1
MONOCYTES_66
0.1
MONOCYTES_67
0.1
MONOCYTES_68
0.0
MONOCYTES_69
0.0
MONOCYTES_70
0.0
MONOCYTES_71
0.0
MONOCYTES_72
0.0
MONOCYTES_73
0.0
MONOCYTES_74
0.0
MONOCYTES_75
0.0
MONOCYTES_76
0.0
MONOCYTES_77
0.0
MONOCYTES_78
0.0
MONOCYTES_79
0.0
MONOCYTES_80
0.0
MONOCYTES_81
0.0
MONOCYTES_82
0.0
MONOCYTES_83
0.0
MONOCYTES_84
0.0
MONOCYTES_85
0.0
MONOCYTES_86
0.0
MONOCYTES_87
0.0
MONOCYTES_88
0.0
MONOCYTES_89
0.0
MONOCYTES_90
0.0
MONOCYTES_91
0.0
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Non-classical monocyte TPM: 54.1
Samples: 90
Max TPM: 111.3
Min TPM: 0.0
M2_1
111.3
M2_2
108.9
M2_3
105.2
M2_4
104.2
M2_5
103.3
M2_6
102.5
M2_7
101.5
M2_8
101.3
M2_9
100.4
M2_10
98.8
M2_11
98.3
M2_12
97.5
M2_13
96.7
M2_14
96.5
M2_15
96.4
M2_16
96.1
M2_17
95.4
M2_18
95.3
M2_19
95.0
M2_20
94.9
M2_21
94.7
M2_22
94.4
M2_23
94.2
M2_24
94.1
M2_25
94.0
M2_26
93.8
M2_27
93.1
M2_28
92.7
M2_29
92.4
M2_30
92.3
M2_31
91.6
M2_32
91.6
M2_33
91.2
M2_34
90.4
M2_35
89.6
M2_36
88.2
M2_37
87.5
M2_38
86.8
M2_39
86.2
M2_40
85.9
M2_41
85.7
M2_42
85.6
M2_43
83.9
M2_44
83.1
M2_45
83.0
M2_46
82.3
M2_47
82.3
M2_48
80.7
M2_49
80.0
M2_50
77.9
M2_51
73.9
M2_52
72.7
M2_53
67.1
M2_54
1.5
M2_55
0.2
M2_56
0.2
M2_57
0.2
M2_58
0.2
M2_59
0.1
M2_60
0.1
M2_61
0.1
M2_62
0.1
M2_63
0.1
M2_64
0.1
M2_65
0.1
M2_66
0.1
M2_67
0.1
M2_68
0.1
M2_69
0.0
M2_70
0.0
M2_71
0.0
M2_72
0.0
M2_73
0.0
M2_74
0.0
M2_75
0.0
M2_76
0.0
M2_77
0.0
M2_78
0.0
M2_79
0.0
M2_80
0.0
M2_81
0.0
M2_82
0.0
M2_83
0.0
M2_84
0.0
M2_85
0.0
M2_86
0.0
M2_87
0.0
M2_88
0.0
M2_89
0.0
M2_90
0.0
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