HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:54.5 nTPM
HPA Brain:55.6 nTPM
GTEx:54.5 nTPM
FANTOM5:51.5 Scaled Tags Per Million
Pig:60.3 nTPM
Mouse:45.6 nTPM
Allen mouse:16.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038313Antibody HPA038314
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 55.6
Sample id Sample description nTPM
Hippocampus
nTPM: 52.2
2529 Female, age 94, left hemisphere 54.7
2621 Female, age 67, right hemisphere 54.4
1855 Male, age 76, left hemisphere 54.1
1911 Female, age 85, right hemisphere 53.2
2148 Female, age 91, left hemisphere 51.5
1898 Male, age 80, left hemisphere 45.1
Dentate gyrus
nTPM: 49.8
1927 Female, age 91, both hemispheres 53.5
2010 Male, age 76, both hemispheres 53.4
2528 Male, age 74, both hemispheres 50.9
2246 Female, age 85, both hemispheres 49.2
2530 Female, age 94, left hemisphere 47.3
2531 Female, age 67, both hemispheres 44.4
Entorhinal gyrus
nTPM: 54.2
2613 Female, age 94, left hemisphere 58.5
2764 Male, age 80, right hemisphere 57.9
1787 Male, age 76, left hemisphere 52.7
2117 Female, age 91, right hemisphere 52.5
1938 Female, age 85, left hemisphere 52.0
2686 Male, age 75, right hemisphere 51.4
Hippocampus, CA1
nTPM: 51.0
2749 Male, age 80, left hemisphere 63.9
2082 Female, age 91, right hemisphere 53.9
2045 Male, age 76, both hemispheres 48.2
2527 Male, age 74, both hemispheres 47.0
1873 Female, age 85, both hemispheres 41.9
Hippocampus, CA2
nTPM: 53.0
1892 Male, age 76, both hemispheres 57.6
2437 Female, age 94, left hemisphere 52.9
2113 Female, age 91, right hemisphere 52.7
2249 Male, age 74, both hemispheres 52.6
1963 Male, age 80, left hemisphere 52.5
1940 Female, age 85, left hemisphere 49.6
Hippocampus, CA3
nTPM: 55.2
2137 Male, age 80, left hemisphere 71.1
2436 Male, age 74, both hemispheres 57.7
1867 Male, age 76, both hemispheres 56.6
2620 Female, age 94, left hemisphere 52.3
1891 Female, age 85, both hemispheres 48.4
2861 Female, age 67, both hemispheres 45.1
Parahippocampal cortex
nTPM: 53.7
2693 Female, age 94, both hemispheres 59.2
1990 Female, age 91, right hemisphere 57.5
2532 Female, age 72, left hemisphere 55.8
2245 Female, age 91, both hemispheres 55.6
2692 Male, age 74, both hemispheres 55.4
2622 Female, age 67, right hemisphere 53.6
1850 Male, age 80, both hemispheres 53.4
2018 Male, age 76, both hemispheres 51.5
2250 Female, age 67, right hemisphere 48.6
1933 Female, age 85, both hemispheres 46.5
Perirhinal gyrus
nTPM: 53.2
2848 Male, age 76, right hemisphere 60.5
2521 Female, age 94, right hemisphere 53.9
1794 Male, age 80, right hemisphere 51.7
1847 Female, age 91, left hemisphere 50.9
1841 Female, age 85, right hemisphere 49.1
Subiculum
nTPM: 55.6
2438 Female, age 94, left hemisphere 62.0
1901 Male, age 80, both hemispheres 57.4
2619 Male, age 74, both hemispheres 56.9
2042 Male, age 76, both hemispheres 56.7
1977 Female, age 85, both hemispheres 51.0
2729 Female, age 91, right hemisphere 49.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 54.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 54.5
Samples: 255

Max nTPM: 96.3
Min nTPM: 20.3
Std nTPM: 10.2
Median nTPM: 53.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 96.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 86.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 85.6
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 84.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 81.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 80.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 77.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 77.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 74.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 74.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 73.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.5
FF:10153-102I9 76 years, female 69.9
FF:10169-103B7 60 years, female 33.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 60.3
Pig sample Sample description nTPM
Subiculum
nTPM: 51.4
Samples: 4

Max nTPM: 64.5
Min nTPM: 44.8
Sample A Female 64.5
Sample B Female 44.8
Sample C Male 50.4
Sample D Male 45.7
Dorsal hippocampus
nTPM: 60.3
Samples: 4

Max nTPM: 76.9
Min nTPM: 43.7
Sample A Female 76.9
Sample B Female 59.2
Sample C Male 61.5
Sample D Male 43.7
Entorhinal cortex
nTPM: 54.7
Samples: 4

Max nTPM: 63.9
Min nTPM: 49.3
Sample A Female 63.9
Sample B Female 49.3
Sample C Male 50.9
Sample D Male 54.6
Ventral hippocampus
nTPM: 57.9
Samples: 4

Max nTPM: 74.9
Min nTPM: 39.1
Sample A Female 51.6
Sample B Female 39.1
Sample C Male 65.8
Sample D Male 74.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 45.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.0
Samples: 4

Max nTPM: 41.6
Min nTPM: 38.7
Sample A Male 41.6
Sample B Male 38.7
Sample C Female 40.4
Sample D Female 39.4
Hippocampal formation
nTPM: 45.7
Samples: 4

Max nTPM: 50.4
Min nTPM: 39.7
Sample A Male 39.7
Sample B Male 43.7
Sample C Female 48.8
Sample D Female 50.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.1
69407086 Antisense, RP_050412_02_H02, Mouse strain C57BL/6J (56 days, male) 16.1

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