A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
15.0
nTPM
Schmiedel:
28.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.4
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.2
P10809_1003
0.4
P10809_1020
0.4
P10809_1039
0.2
P10809_1058
0.4
P10809_1080
0.3
P10809_1107
0.4
Intermediate monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.1
P10809_1004
0.1
P10809_1023
0.8
P10809_1042
0.9
P10809_1061
1.7
P10809_1081
0.5
P10809_1108
0.5
Non-classical monocyte nTPM: 0.5
Samples: 5
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1005
0.1
P10809_1053
0.4
P10809_1072
0.0
P10809_1082
1.3
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.0
Monaco sample
nTPM
Classical monocyte nTPM: 12.1
Samples: 4
Max nTPM: 19.2
Min nTPM: 8.5
RHH5313_R3680
8.5
RHH5221_R3593
11.0
RHH5250_R3622
9.6
RHH5279_R3651
19.2
Intermediate monocyte nTPM: 13.9
Samples: 4
Max nTPM: 16.3
Min nTPM: 11.1
RHH5314_R3681
16.3
RHH5222_R3594
13.3
RHH5251_R3623
11.1
RHH5280_R3652
14.8
Non-classical monocyte nTPM: 15.0
Samples: 4
Max nTPM: 19.7
Min nTPM: 8.3
RHH5315_R3682
8.3
RHH5223_R3595
19.7
RHH5252_R3624
15.5
RHH5281_R3653
16.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
Schmiedel sample id
TPM
Classical monocyte TPM: 18.2
Samples: 91
Max TPM: 26.3
Min TPM: 12.5
MONOCYTES_1
26.3
MONOCYTES_2
24.5
MONOCYTES_3
23.4
MONOCYTES_4
23.0
MONOCYTES_5
22.4
MONOCYTES_6
22.3
MONOCYTES_7
21.4
MONOCYTES_8
21.2
MONOCYTES_9
21.0
MONOCYTES_10
20.9
MONOCYTES_11
20.9
MONOCYTES_12
20.9
MONOCYTES_13
20.8
MONOCYTES_14
20.7
MONOCYTES_15
20.6
MONOCYTES_16
20.4
MONOCYTES_17
20.4
MONOCYTES_18
20.4
MONOCYTES_19
20.3
MONOCYTES_20
19.8
MONOCYTES_21
19.6
MONOCYTES_22
19.5
MONOCYTES_23
19.5
MONOCYTES_24
19.4
MONOCYTES_25
19.4
MONOCYTES_26
19.4
MONOCYTES_27
19.3
MONOCYTES_28
19.2
MONOCYTES_29
19.1
MONOCYTES_30
19.1
MONOCYTES_31
19.0
MONOCYTES_32
19.0
MONOCYTES_33
19.0
MONOCYTES_34
19.0
MONOCYTES_35
18.9
MONOCYTES_36
18.8
MONOCYTES_37
18.7
MONOCYTES_38
18.7
MONOCYTES_39
18.7
MONOCYTES_40
18.6
MONOCYTES_41
18.6
MONOCYTES_42
18.3
MONOCYTES_43
18.3
MONOCYTES_44
18.2
MONOCYTES_45
18.2
MONOCYTES_46
18.1
MONOCYTES_47
18.1
MONOCYTES_48
18.0
MONOCYTES_49
18.0
MONOCYTES_50
17.9
MONOCYTES_51
17.7
MONOCYTES_52
17.7
MONOCYTES_53
17.6
MONOCYTES_54
17.6
MONOCYTES_55
17.5
MONOCYTES_56
17.5
MONOCYTES_57
17.4
MONOCYTES_58
17.3
MONOCYTES_59
17.3
MONOCYTES_60
17.2
MONOCYTES_61
17.1
MONOCYTES_62
17.0
MONOCYTES_63
16.8
MONOCYTES_64
16.8
MONOCYTES_65
16.8
MONOCYTES_66
16.7
MONOCYTES_67
16.5
MONOCYTES_68
16.5
MONOCYTES_69
16.4
MONOCYTES_70
16.4
MONOCYTES_71
16.4
MONOCYTES_72
16.3
MONOCYTES_73
16.1
MONOCYTES_74
16.1
MONOCYTES_75
15.9
MONOCYTES_76
15.8
MONOCYTES_77
15.8
MONOCYTES_78
15.7
MONOCYTES_79
15.7
MONOCYTES_80
15.6
MONOCYTES_81
15.5
MONOCYTES_82
15.3
MONOCYTES_83
15.2
MONOCYTES_84
14.6
MONOCYTES_85
14.5
MONOCYTES_86
14.4
MONOCYTES_87
14.0
MONOCYTES_88
13.8
MONOCYTES_89
13.3
MONOCYTES_90
13.0
MONOCYTES_91
12.5
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Non-classical monocyte TPM: 28.6
Samples: 90
Max TPM: 46.0
Min TPM: 17.8
M2_1
46.0
M2_2
44.2
M2_3
40.3
M2_4
37.1
M2_5
36.9
M2_6
36.3
M2_7
36.0
M2_8
35.7
M2_9
35.7
M2_10
35.1
M2_11
35.1
M2_12
34.3
M2_13
34.1
M2_14
33.7
M2_15
33.6
M2_16
33.4
M2_17
32.8
M2_18
32.2
M2_19
32.1
M2_20
32.1
M2_21
31.9
M2_22
31.8
M2_23
31.6
M2_24
31.6
M2_25
31.4
M2_26
31.0
M2_27
30.4
M2_28
30.4
M2_29
30.4
M2_30
30.3
M2_31
30.1
M2_32
29.7
M2_33
29.6
M2_34
29.6
M2_35
29.5
M2_36
29.4
M2_37
29.2
M2_38
29.2
M2_39
29.1
M2_40
29.1
M2_41
29.0
M2_42
28.9
M2_43
28.7
M2_44
28.6
M2_45
28.4
M2_46
28.2
M2_47
28.2
M2_48
28.2
M2_49
28.0
M2_50
28.0
M2_51
27.9
M2_52
27.7
M2_53
27.6
M2_54
27.2
M2_55
27.1
M2_56
27.0
M2_57
27.0
M2_58
27.0
M2_59
26.8
M2_60
26.5
M2_61
26.4
M2_62
26.2
M2_63
26.2
M2_64
26.2
M2_65
25.8
M2_66
25.8
M2_67
25.0
M2_68
24.7
M2_69
24.7
M2_70
24.4
M2_71
24.2
M2_72
24.2
M2_73
24.1
M2_74
24.0
M2_75
24.0
M2_76
23.5
M2_77
23.4
M2_78
23.4
M2_79
23.3
M2_80
23.0
M2_81
22.8
M2_82
22.7
M2_83
22.1
M2_84
21.6
M2_85
21.4
M2_86
21.0
M2_87
18.7
M2_88
18.0
M2_89
17.9
M2_90
17.8
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