A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.9
nTPM
Monaco:
94.6
nTPM
Schmiedel:
16.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.9
HPA sample
nTPM
Memory B-cell nTPM: 20.9
Samples: 6
Max nTPM: 33.7
Min nTPM: 0.7
P10809_1017
32.0
P10809_1025
22.6
P10809_1044
0.7
P10809_1063
23.1
P10809_1092
13.3
P10809_1105
33.7
Naive B-cell nTPM: 5.6
Samples: 6
Max nTPM: 7.4
Min nTPM: 3.7
P10809_1011
3.7
P10809_1029
6.0
P10809_1048
7.4
P10809_1067
5.7
P10809_1091
3.8
P10809_1104
7.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 67.4
Samples: 4
Max nTPM: 95.2
Min nTPM: 32.4
RHH5310_R3677
95.2
RHH5218_R3590
54.4
RHH5247_R3619
87.6
RHH5276_R3648
32.4
Naive B-cell nTPM: 21.2
Samples: 4
Max nTPM: 37.1
Min nTPM: 6.5
RHH5308_R3675
21.7
RHH5216_R3588
19.3
RHH5245_R3617
37.1
RHH5274_R3646
6.5
Non-switched memory B-cell nTPM: 94.6
Samples: 4
Max nTPM: 111.9
Min nTPM: 57.7
RHH5309_R3676
99.2
RHH5217_R3589
111.9
RHH5246_R3618
109.4
RHH5275_R3647
57.7
Plasmablast nTPM: 49.4
Samples: 4
Max nTPM: 71.0
Min nTPM: 36.9
RHH5312_R3679
43.7
RHH5220_R3592
36.9
RHH5249_R3621
71.0
RHH5278_R3650
46.0
Switched memory B-cell nTPM: 84.3
Samples: 4
Max nTPM: 135.5
Min nTPM: 55.7
RHH5311_R3678
89.2
RHH5219_R3591
55.7
RHH5248_R3620
135.5
RHH5277_R3649
56.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.6
Schmiedel sample id
TPM
Naive B-cell TPM: 16.6
Samples: 91
Max TPM: 28.9
Min TPM: 8.7
B_CELL_NAIVE_1
28.9
B_CELL_NAIVE_2
27.9
B_CELL_NAIVE_3
27.3
B_CELL_NAIVE_4
26.8
B_CELL_NAIVE_5
25.8
B_CELL_NAIVE_6
25.7
B_CELL_NAIVE_7
25.6
B_CELL_NAIVE_8
23.1
B_CELL_NAIVE_9
22.6
B_CELL_NAIVE_10
22.4
B_CELL_NAIVE_11
21.8
B_CELL_NAIVE_12
21.3
B_CELL_NAIVE_13
21.2
B_CELL_NAIVE_14
21.2
B_CELL_NAIVE_15
21.2
B_CELL_NAIVE_16
21.1
B_CELL_NAIVE_17
20.2
B_CELL_NAIVE_18
20.2
B_CELL_NAIVE_19
20.1
B_CELL_NAIVE_20
20.1
B_CELL_NAIVE_21
19.5
B_CELL_NAIVE_22
18.9
B_CELL_NAIVE_23
18.9
B_CELL_NAIVE_24
18.7
B_CELL_NAIVE_25
18.6
B_CELL_NAIVE_26
18.5
B_CELL_NAIVE_27
18.5
B_CELL_NAIVE_28
18.4
B_CELL_NAIVE_29
18.3
B_CELL_NAIVE_30
17.7
B_CELL_NAIVE_31
17.6
B_CELL_NAIVE_32
17.4
B_CELL_NAIVE_33
17.1
B_CELL_NAIVE_34
17.1
B_CELL_NAIVE_35
17.1
B_CELL_NAIVE_36
17.1
B_CELL_NAIVE_37
17.0
B_CELL_NAIVE_38
16.9
B_CELL_NAIVE_39
16.8
B_CELL_NAIVE_40
16.4
B_CELL_NAIVE_41
16.3
B_CELL_NAIVE_42
16.2
B_CELL_NAIVE_43
15.9
B_CELL_NAIVE_44
15.6
B_CELL_NAIVE_45
15.5
B_CELL_NAIVE_46
15.4
B_CELL_NAIVE_47
15.4
B_CELL_NAIVE_48
15.4
B_CELL_NAIVE_49
15.4
B_CELL_NAIVE_50
15.3
B_CELL_NAIVE_51
15.3
B_CELL_NAIVE_52
15.2
B_CELL_NAIVE_53
15.1
B_CELL_NAIVE_54
15.1
B_CELL_NAIVE_55
15.0
B_CELL_NAIVE_56
14.9
B_CELL_NAIVE_57
14.8
B_CELL_NAIVE_58
14.8
B_CELL_NAIVE_59
14.5
B_CELL_NAIVE_60
14.5
B_CELL_NAIVE_61
14.5
B_CELL_NAIVE_62
14.4
B_CELL_NAIVE_63
14.4
B_CELL_NAIVE_64
14.2
B_CELL_NAIVE_65
14.1
B_CELL_NAIVE_66
14.0
B_CELL_NAIVE_67
13.8
B_CELL_NAIVE_68
13.8
B_CELL_NAIVE_69
13.6
B_CELL_NAIVE_70
13.6
B_CELL_NAIVE_71
13.4
B_CELL_NAIVE_72
13.3
B_CELL_NAIVE_73
13.3
B_CELL_NAIVE_74
13.1
B_CELL_NAIVE_75
13.0
B_CELL_NAIVE_76
12.9
B_CELL_NAIVE_77
12.8
B_CELL_NAIVE_78
12.4
B_CELL_NAIVE_79
12.3
B_CELL_NAIVE_80
12.2
B_CELL_NAIVE_81
11.9
B_CELL_NAIVE_82
11.6
B_CELL_NAIVE_83
11.6
B_CELL_NAIVE_84
11.4
B_CELL_NAIVE_85
11.2
B_CELL_NAIVE_86
11.0
B_CELL_NAIVE_87
10.8
B_CELL_NAIVE_88
10.0
B_CELL_NAIVE_89
9.6
B_CELL_NAIVE_90
9.1
B_CELL_NAIVE_91
8.7
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