A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.6
nTPM
Monaco:
67.6
nTPM
Schmiedel:
34.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.6
HPA sample
nTPM
Classical monocyte nTPM: 9.0
Samples: 6
Max nTPM: 15.2
Min nTPM: 6.4
P10809_1003
15.2
P10809_1020
6.5
P10809_1039
6.6
P10809_1058
6.4
P10809_1080
11.1
P10809_1107
8.4
Intermediate monocyte nTPM: 13.2
Samples: 6
Max nTPM: 21.7
Min nTPM: 6.4
P10809_1004
16.2
P10809_1023
6.4
P10809_1042
21.7
P10809_1061
18.8
P10809_1081
9.3
P10809_1108
6.9
Non-classical monocyte nTPM: 17.5
Samples: 5
Max nTPM: 30.1
Min nTPM: 9.0
P10809_1005
21.8
P10809_1053
16.9
P10809_1072
30.1
P10809_1082
9.9
P10809_1109
9.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.6
Monaco sample
nTPM
Classical monocyte nTPM: 49.2
Samples: 4
Max nTPM: 55.1
Min nTPM: 42.2
RHH5313_R3680
55.1
RHH5221_R3593
49.4
RHH5250_R3622
50.1
RHH5279_R3651
42.2
Intermediate monocyte nTPM: 64.3
Samples: 4
Max nTPM: 86.7
Min nTPM: 47.8
RHH5314_R3681
57.3
RHH5222_R3594
86.7
RHH5251_R3623
47.8
RHH5280_R3652
65.4
Non-classical monocyte nTPM: 67.6
Samples: 4
Max nTPM: 80.4
Min nTPM: 51.5
RHH5315_R3682
65.9
RHH5223_R3595
80.4
RHH5252_R3624
72.6
RHH5281_R3653
51.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.8
Schmiedel sample id
TPM
Classical monocyte TPM: 28.5
Samples: 91
Max TPM: 41.6
Min TPM: 19.3
MONOCYTES_1
41.6
MONOCYTES_2
39.6
MONOCYTES_3
38.9
MONOCYTES_4
38.1
MONOCYTES_5
38.0
MONOCYTES_6
37.8
MONOCYTES_7
37.4
MONOCYTES_8
36.9
MONOCYTES_9
36.6
MONOCYTES_10
36.0
MONOCYTES_11
35.9
MONOCYTES_12
35.9
MONOCYTES_13
34.2
MONOCYTES_14
34.0
MONOCYTES_15
33.6
MONOCYTES_16
33.1
MONOCYTES_17
33.0
MONOCYTES_18
32.7
MONOCYTES_19
32.5
MONOCYTES_20
32.1
MONOCYTES_21
31.9
MONOCYTES_22
31.6
MONOCYTES_23
31.6
MONOCYTES_24
31.6
MONOCYTES_25
31.3
MONOCYTES_26
31.2
MONOCYTES_27
30.9
MONOCYTES_28
30.9
MONOCYTES_29
30.9
MONOCYTES_30
30.7
MONOCYTES_31
30.6
MONOCYTES_32
30.5
MONOCYTES_33
29.8
MONOCYTES_34
29.7
MONOCYTES_35
29.6
MONOCYTES_36
29.6
MONOCYTES_37
29.5
MONOCYTES_38
29.2
MONOCYTES_39
29.0
MONOCYTES_40
28.9
MONOCYTES_41
28.8
MONOCYTES_42
28.8
MONOCYTES_43
28.7
MONOCYTES_44
28.6
MONOCYTES_45
28.6
MONOCYTES_46
28.5
MONOCYTES_47
28.3
MONOCYTES_48
27.9
MONOCYTES_49
27.8
MONOCYTES_50
27.7
MONOCYTES_51
27.5
MONOCYTES_52
27.4
MONOCYTES_53
27.2
MONOCYTES_54
27.1
MONOCYTES_55
27.0
MONOCYTES_56
26.6
MONOCYTES_57
26.5
MONOCYTES_58
26.3
MONOCYTES_59
26.3
MONOCYTES_60
26.1
MONOCYTES_61
25.9
MONOCYTES_62
25.8
MONOCYTES_63
25.7
MONOCYTES_64
25.4
MONOCYTES_65
25.1
MONOCYTES_66
25.0
MONOCYTES_67
24.9
MONOCYTES_68
24.8
MONOCYTES_69
24.7
MONOCYTES_70
24.4
MONOCYTES_71
24.3
MONOCYTES_72
24.3
MONOCYTES_73
24.3
MONOCYTES_74
24.2
MONOCYTES_75
23.6
MONOCYTES_76
23.6
MONOCYTES_77
23.0
MONOCYTES_78
22.9
MONOCYTES_79
22.6
MONOCYTES_80
22.3
MONOCYTES_81
22.2
MONOCYTES_82
22.2
MONOCYTES_83
21.9
MONOCYTES_84
21.8
MONOCYTES_85
20.8
MONOCYTES_86
20.8
MONOCYTES_87
20.5
MONOCYTES_88
20.3
MONOCYTES_89
20.2
MONOCYTES_90
19.4
MONOCYTES_91
19.3
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Non-classical monocyte TPM: 34.8
Samples: 90
Max TPM: 52.8
Min TPM: 18.4
M2_1
52.8
M2_2
52.0
M2_3
50.4
M2_4
49.6
M2_5
48.6
M2_6
47.9
M2_7
46.6
M2_8
46.6
M2_9
46.3
M2_10
46.1
M2_11
45.6
M2_12
45.5
M2_13
45.1
M2_14
44.1
M2_15
44.0
M2_16
43.9
M2_17
43.8
M2_18
43.6
M2_19
42.7
M2_20
41.2
M2_21
41.1
M2_22
40.6
M2_23
40.0
M2_24
39.9
M2_25
39.7
M2_26
39.3
M2_27
38.8
M2_28
38.0
M2_29
37.7
M2_30
37.6
M2_31
37.6
M2_32
37.5
M2_33
37.4
M2_34
36.7
M2_35
36.6
M2_36
36.4
M2_37
36.1
M2_38
36.1
M2_39
36.0
M2_40
35.9
M2_41
35.6
M2_42
35.5
M2_43
35.5
M2_44
35.2
M2_45
35.1
M2_46
35.1
M2_47
34.8
M2_48
34.2
M2_49
34.2
M2_50
33.9
M2_51
33.8
M2_52
33.6
M2_53
33.1
M2_54
33.1
M2_55
32.6
M2_56
31.9
M2_57
31.8
M2_58
31.7
M2_59
31.5
M2_60
31.5
M2_61
30.5
M2_62
30.1
M2_63
29.6
M2_64
29.5
M2_65
28.9
M2_66
28.7
M2_67
28.5
M2_68
28.2
M2_69
28.0
M2_70
27.9
M2_71
27.8
M2_72
27.0
M2_73
26.9
M2_74
26.5
M2_75
26.5
M2_76
26.4
M2_77
26.3
M2_78
26.2
M2_79
25.8
M2_80
25.8
M2_81
24.9
M2_82
24.8
M2_83
24.6
M2_84
24.0
M2_85
21.7
M2_86
21.4
M2_87
20.8
M2_88
20.6
M2_89
19.9
M2_90
18.4
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