A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
88.3
nTPM
Monaco:
112.9
nTPM
Schmiedel:
43.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.3
HPA sample
nTPM
Classical monocyte nTPM: 56.4
Samples: 6
Max nTPM: 68.0
Min nTPM: 41.7
P10809_1003
46.8
P10809_1020
65.9
P10809_1039
61.5
P10809_1058
41.7
P10809_1080
54.3
P10809_1107
68.0
Intermediate monocyte nTPM: 83.7
Samples: 6
Max nTPM: 119.7
Min nTPM: 56.5
P10809_1004
61.2
P10809_1023
89.0
P10809_1042
119.7
P10809_1061
56.5
P10809_1081
67.0
P10809_1108
108.6
Non-classical monocyte nTPM: 88.3
Samples: 5
Max nTPM: 151.1
Min nTPM: 54.8
P10809_1005
77.9
P10809_1053
69.3
P10809_1072
151.1
P10809_1082
54.8
P10809_1109
88.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.9
Monaco sample
nTPM
Classical monocyte nTPM: 104.2
Samples: 4
Max nTPM: 114.3
Min nTPM: 99.1
RHH5313_R3680
100.3
RHH5221_R3593
99.1
RHH5250_R3622
114.3
RHH5279_R3651
102.9
Intermediate monocyte nTPM: 112.9
Samples: 4
Max nTPM: 133.7
Min nTPM: 96.4
RHH5314_R3681
133.7
RHH5222_R3594
96.4
RHH5251_R3623
103.5
RHH5280_R3652
117.9
Non-classical monocyte nTPM: 110.6
Samples: 4
Max nTPM: 138.4
Min nTPM: 93.1
RHH5315_R3682
99.1
RHH5223_R3595
93.1
RHH5252_R3624
111.9
RHH5281_R3653
138.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.7
Schmiedel sample id
TPM
Classical monocyte TPM: 43.7
Samples: 91
Max TPM: 70.3
Min TPM: 20.2
MONOCYTES_1
70.3
MONOCYTES_2
67.2
MONOCYTES_3
66.2
MONOCYTES_4
64.6
MONOCYTES_5
63.6
MONOCYTES_6
63.2
MONOCYTES_7
61.6
MONOCYTES_8
61.5
MONOCYTES_9
61.3
MONOCYTES_10
61.0
MONOCYTES_11
60.4
MONOCYTES_12
60.0
MONOCYTES_13
57.2
MONOCYTES_14
57.2
MONOCYTES_15
57.0
MONOCYTES_16
56.7
MONOCYTES_17
56.7
MONOCYTES_18
55.6
MONOCYTES_19
55.4
MONOCYTES_20
55.1
MONOCYTES_21
54.6
MONOCYTES_22
54.1
MONOCYTES_23
53.2
MONOCYTES_24
52.9
MONOCYTES_25
52.7
MONOCYTES_26
52.4
MONOCYTES_27
52.2
MONOCYTES_28
52.0
MONOCYTES_29
51.9
MONOCYTES_30
51.6
MONOCYTES_31
51.4
MONOCYTES_32
51.0
MONOCYTES_33
50.6
MONOCYTES_34
49.6
MONOCYTES_35
49.1
MONOCYTES_36
49.0
MONOCYTES_37
48.5
MONOCYTES_38
48.1
MONOCYTES_39
47.8
MONOCYTES_40
47.7
MONOCYTES_41
46.9
MONOCYTES_42
46.3
MONOCYTES_43
45.2
MONOCYTES_44
45.1
MONOCYTES_45
44.3
MONOCYTES_46
44.0
MONOCYTES_47
43.8
MONOCYTES_48
43.2
MONOCYTES_49
42.7
MONOCYTES_50
42.5
MONOCYTES_51
42.4
MONOCYTES_52
42.3
MONOCYTES_53
42.2
MONOCYTES_54
40.9
MONOCYTES_55
40.8
MONOCYTES_56
40.2
MONOCYTES_57
40.1
MONOCYTES_58
39.7
MONOCYTES_59
39.1
MONOCYTES_60
36.4
MONOCYTES_61
36.3
MONOCYTES_62
36.0
MONOCYTES_63
35.6
MONOCYTES_64
35.5
MONOCYTES_65
35.4
MONOCYTES_66
34.8
MONOCYTES_67
34.7
MONOCYTES_68
33.6
MONOCYTES_69
33.3
MONOCYTES_70
32.4
MONOCYTES_71
31.7
MONOCYTES_72
31.6
MONOCYTES_73
31.6
MONOCYTES_74
31.4
MONOCYTES_75
30.1
MONOCYTES_76
29.9
MONOCYTES_77
29.9
MONOCYTES_78
29.1
MONOCYTES_79
28.0
MONOCYTES_80
27.5
MONOCYTES_81
27.2
MONOCYTES_82
25.8
MONOCYTES_83
23.6
MONOCYTES_84
23.5
MONOCYTES_85
23.0
MONOCYTES_86
22.6
MONOCYTES_87
22.5
MONOCYTES_88
22.0
MONOCYTES_89
20.9
MONOCYTES_90
20.5
MONOCYTES_91
20.2
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Non-classical monocyte TPM: 36.4
Samples: 90
Max TPM: 63.4
Min TPM: 8.3
M2_1
63.4
M2_2
60.4
M2_3
59.8
M2_4
59.5
M2_5
59.5
M2_6
59.5
M2_7
57.8
M2_8
56.9
M2_9
56.3
M2_10
56.0
M2_11
53.9
M2_12
51.6
M2_13
51.3
M2_14
50.7
M2_15
50.0
M2_16
49.6
M2_17
49.5
M2_18
49.2
M2_19
49.1
M2_20
48.9
M2_21
48.8
M2_22
47.9
M2_23
47.1
M2_24
47.0
M2_25
46.6
M2_26
46.4
M2_27
46.1
M2_28
45.2
M2_29
44.8
M2_30
44.3
M2_31
44.1
M2_32
43.4
M2_33
43.3
M2_34
42.6
M2_35
42.1
M2_36
41.2
M2_37
40.8
M2_38
40.6
M2_39
39.6
M2_40
39.6
M2_41
39.1
M2_42
38.4
M2_43
38.0
M2_44
38.0
M2_45
37.9
M2_46
37.4
M2_47
37.2
M2_48
36.8
M2_49
35.8
M2_50
35.2
M2_51
34.7
M2_52
34.5
M2_53
34.4
M2_54
33.0
M2_55
32.5
M2_56
32.4
M2_57
31.7
M2_58
31.4
M2_59
31.3
M2_60
30.5
M2_61
30.2
M2_62
29.5
M2_63
28.8
M2_64
28.5
M2_65
27.7
M2_66
27.2
M2_67
27.2
M2_68
26.6
M2_69
25.1
M2_70
25.0
M2_71
24.4
M2_72
23.8
M2_73
21.8
M2_74
20.3
M2_75
18.9
M2_76
18.9
M2_77
18.5
M2_78
17.9
M2_79
16.3
M2_80
15.6
M2_81
15.0
M2_82
14.9
M2_83
14.4
M2_84
14.3
M2_85
14.2
M2_86
14.0
M2_87
12.8
M2_88
9.8
M2_89
8.8
M2_90
8.3
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