A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.4
nTPM
Monaco:
28.6
nTPM
Schmiedel:
46.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.4
HPA sample
nTPM
Classical monocyte nTPM: 29.4
Samples: 6
Max nTPM: 50.5
Min nTPM: 12.7
P10809_1003
35.3
P10809_1020
36.9
P10809_1039
50.5
P10809_1058
16.5
P10809_1080
24.6
P10809_1107
12.7
Intermediate monocyte nTPM: 12.1
Samples: 6
Max nTPM: 24.8
Min nTPM: 0.2
P10809_1004
18.1
P10809_1023
20.3
P10809_1042
24.8
P10809_1061
5.7
P10809_1081
3.4
P10809_1108
0.2
Non-classical monocyte nTPM: 9.3
Samples: 5
Max nTPM: 24.0
Min nTPM: 2.1
P10809_1005
3.9
P10809_1053
24.0
P10809_1072
8.3
P10809_1082
2.1
P10809_1109
8.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
Monaco sample
nTPM
Classical monocyte nTPM: 28.6
Samples: 4
Max nTPM: 57.4
Min nTPM: 14.3
RHH5313_R3680
26.1
RHH5221_R3593
16.6
RHH5250_R3622
57.4
RHH5279_R3651
14.3
Intermediate monocyte nTPM: 18.4
Samples: 4
Max nTPM: 37.2
Min nTPM: 5.8
RHH5314_R3681
18.6
RHH5222_R3594
12.1
RHH5251_R3623
37.2
RHH5280_R3652
5.8
Non-classical monocyte nTPM: 15.0
Samples: 4
Max nTPM: 21.1
Min nTPM: 5.7
RHH5315_R3682
21.1
RHH5223_R3595
14.8
RHH5252_R3624
18.3
RHH5281_R3653
5.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.8
Schmiedel sample id
TPM
Classical monocyte TPM: 46.8
Samples: 91
Max TPM: 67.8
Min TPM: 25.8
MONOCYTES_1
67.8
MONOCYTES_2
66.9
MONOCYTES_3
66.6
MONOCYTES_4
63.7
MONOCYTES_5
63.4
MONOCYTES_6
63.1
MONOCYTES_7
63.1
MONOCYTES_8
62.9
MONOCYTES_9
62.5
MONOCYTES_10
61.7
MONOCYTES_11
60.5
MONOCYTES_12
59.7
MONOCYTES_13
58.8
MONOCYTES_14
57.7
MONOCYTES_15
57.4
MONOCYTES_16
56.7
MONOCYTES_17
56.2
MONOCYTES_18
55.9
MONOCYTES_19
55.8
MONOCYTES_20
55.8
MONOCYTES_21
55.6
MONOCYTES_22
55.2
MONOCYTES_23
54.9
MONOCYTES_24
54.8
MONOCYTES_25
53.8
MONOCYTES_26
53.6
MONOCYTES_27
52.7
MONOCYTES_28
52.4
MONOCYTES_29
52.3
MONOCYTES_30
52.0
MONOCYTES_31
52.0
MONOCYTES_32
51.5
MONOCYTES_33
51.0
MONOCYTES_34
50.9
MONOCYTES_35
50.7
MONOCYTES_36
50.6
MONOCYTES_37
50.1
MONOCYTES_38
48.3
MONOCYTES_39
48.3
MONOCYTES_40
47.7
MONOCYTES_41
47.1
MONOCYTES_42
46.5
MONOCYTES_43
46.5
MONOCYTES_44
45.8
MONOCYTES_45
45.7
MONOCYTES_46
45.7
MONOCYTES_47
45.3
MONOCYTES_48
45.3
MONOCYTES_49
45.3
MONOCYTES_50
45.2
MONOCYTES_51
45.1
MONOCYTES_52
44.4
MONOCYTES_53
44.1
MONOCYTES_54
44.1
MONOCYTES_55
44.0
MONOCYTES_56
43.5
MONOCYTES_57
43.3
MONOCYTES_58
43.3
MONOCYTES_59
43.3
MONOCYTES_60
43.0
MONOCYTES_61
42.9
MONOCYTES_62
42.8
MONOCYTES_63
41.4
MONOCYTES_64
41.4
MONOCYTES_65
41.3
MONOCYTES_66
41.1
MONOCYTES_67
39.3
MONOCYTES_68
39.2
MONOCYTES_69
39.2
MONOCYTES_70
38.8
MONOCYTES_71
38.3
MONOCYTES_72
38.3
MONOCYTES_73
38.2
MONOCYTES_74
38.1
MONOCYTES_75
38.0
MONOCYTES_76
36.7
MONOCYTES_77
35.0
MONOCYTES_78
34.4
MONOCYTES_79
34.3
MONOCYTES_80
33.8
MONOCYTES_81
33.8
MONOCYTES_82
33.2
MONOCYTES_83
33.1
MONOCYTES_84
31.6
MONOCYTES_85
31.5
MONOCYTES_86
30.7
MONOCYTES_87
29.7
MONOCYTES_88
29.6
MONOCYTES_89
28.9
MONOCYTES_90
28.2
MONOCYTES_91
25.8
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Non-classical monocyte TPM: 18.3
Samples: 90
Max TPM: 31.6
Min TPM: 8.0
M2_1
31.6
M2_2
30.0
M2_3
29.6
M2_4
28.0
M2_5
27.5
M2_6
27.4
M2_7
27.3
M2_8
27.2
M2_9
27.0
M2_10
26.6
M2_11
26.0
M2_12
25.7
M2_13
25.3
M2_14
24.9
M2_15
24.1
M2_16
24.1
M2_17
23.2
M2_18
23.0
M2_19
22.9
M2_20
22.6
M2_21
22.4
M2_22
22.0
M2_23
22.0
M2_24
21.7
M2_25
21.6
M2_26
21.0
M2_27
20.9
M2_28
20.7
M2_29
20.7
M2_30
20.4
M2_31
19.8
M2_32
19.7
M2_33
19.7
M2_34
19.5
M2_35
19.5
M2_36
19.3
M2_37
19.2
M2_38
19.1
M2_39
19.0
M2_40
18.9
M2_41
18.8
M2_42
18.6
M2_43
18.5
M2_44
18.5
M2_45
18.3
M2_46
18.2
M2_47
18.0
M2_48
18.0
M2_49
18.0
M2_50
17.8
M2_51
17.7
M2_52
17.6
M2_53
17.0
M2_54
16.9
M2_55
16.9
M2_56
16.9
M2_57
16.5
M2_58
16.4
M2_59
16.3
M2_60
16.1
M2_61
16.1
M2_62
15.8
M2_63
15.5
M2_64
14.8
M2_65
14.6
M2_66
14.5
M2_67
14.1
M2_68
14.0
M2_69
13.4
M2_70
13.3
M2_71
13.0
M2_72
12.8
M2_73
12.7
M2_74
12.4
M2_75
12.3
M2_76
12.3
M2_77
12.1
M2_78
11.8
M2_79
11.7
M2_80
11.5
M2_81
11.3
M2_82
11.0
M2_83
10.9
M2_84
10.4
M2_85
10.1
M2_86
10.1
M2_87
9.4
M2_88
9.4
M2_89
9.0
M2_90
8.0
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