A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
268.0
nTPM
Monaco:
220.8
nTPM
Schmiedel:
57.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
268.0
HPA sample
nTPM
Classical monocyte nTPM: 186.7
Samples: 6
Max nTPM: 293.5
Min nTPM: 106.4
P10809_1003
106.4
P10809_1020
233.1
P10809_1039
293.5
P10809_1058
145.3
P10809_1080
184.8
P10809_1107
156.9
Intermediate monocyte nTPM: 268.0
Samples: 6
Max nTPM: 358.8
Min nTPM: 198.9
P10809_1004
198.9
P10809_1023
358.8
P10809_1042
327.7
P10809_1061
235.3
P10809_1081
233.5
P10809_1108
253.9
Non-classical monocyte nTPM: 254.5
Samples: 5
Max nTPM: 303.7
Min nTPM: 174.4
P10809_1005
174.4
P10809_1053
303.7
P10809_1072
299.3
P10809_1082
196.2
P10809_1109
298.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
220.8
Monaco sample
nTPM
Classical monocyte nTPM: 220.9
Samples: 4
Max nTPM: 264.6
Min nTPM: 167.8
RHH5313_R3680
224.7
RHH5221_R3593
167.8
RHH5250_R3622
264.6
RHH5279_R3651
226.3
Intermediate monocyte nTPM: 220.1
Samples: 4
Max nTPM: 267.6
Min nTPM: 179.6
RHH5314_R3681
251.3
RHH5222_R3594
179.6
RHH5251_R3623
181.8
RHH5280_R3652
267.6
Non-classical monocyte nTPM: 193.4
Samples: 4
Max nTPM: 238.6
Min nTPM: 136.0
RHH5315_R3682
212.7
RHH5223_R3595
136.0
RHH5252_R3624
186.1
RHH5281_R3653
238.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.0
Schmiedel sample id
TPM
Classical monocyte TPM: 39.8
Samples: 91
Max TPM: 52.3
Min TPM: 30.3
MONOCYTES_1
52.3
MONOCYTES_2
51.5
MONOCYTES_3
48.8
MONOCYTES_4
48.2
MONOCYTES_5
47.7
MONOCYTES_6
47.2
MONOCYTES_7
47.1
MONOCYTES_8
47.0
MONOCYTES_9
46.9
MONOCYTES_10
46.5
MONOCYTES_11
46.1
MONOCYTES_12
45.9
MONOCYTES_13
45.7
MONOCYTES_14
45.3
MONOCYTES_15
45.3
MONOCYTES_16
45.0
MONOCYTES_17
44.7
MONOCYTES_18
44.4
MONOCYTES_19
44.4
MONOCYTES_20
44.3
MONOCYTES_21
44.3
MONOCYTES_22
44.1
MONOCYTES_23
44.1
MONOCYTES_24
43.3
MONOCYTES_25
43.3
MONOCYTES_26
43.2
MONOCYTES_27
43.0
MONOCYTES_28
42.9
MONOCYTES_29
42.6
MONOCYTES_30
42.6
MONOCYTES_31
42.5
MONOCYTES_32
42.5
MONOCYTES_33
41.9
MONOCYTES_34
41.9
MONOCYTES_35
41.8
MONOCYTES_36
41.5
MONOCYTES_37
41.1
MONOCYTES_38
40.5
MONOCYTES_39
40.3
MONOCYTES_40
40.2
MONOCYTES_41
40.1
MONOCYTES_42
40.1
MONOCYTES_43
39.7
MONOCYTES_44
39.6
MONOCYTES_45
39.6
MONOCYTES_46
39.4
MONOCYTES_47
39.3
MONOCYTES_48
39.2
MONOCYTES_49
39.1
MONOCYTES_50
38.9
MONOCYTES_51
38.8
MONOCYTES_52
38.6
MONOCYTES_53
38.6
MONOCYTES_54
38.5
MONOCYTES_55
38.1
MONOCYTES_56
37.6
MONOCYTES_57
37.6
MONOCYTES_58
37.5
MONOCYTES_59
37.4
MONOCYTES_60
37.3
MONOCYTES_61
37.2
MONOCYTES_62
37.0
MONOCYTES_63
36.9
MONOCYTES_64
36.7
MONOCYTES_65
36.4
MONOCYTES_66
36.3
MONOCYTES_67
36.2
MONOCYTES_68
36.0
MONOCYTES_69
35.8
MONOCYTES_70
35.6
MONOCYTES_71
35.4
MONOCYTES_72
35.4
MONOCYTES_73
35.4
MONOCYTES_74
34.9
MONOCYTES_75
34.8
MONOCYTES_76
34.7
MONOCYTES_77
34.4
MONOCYTES_78
34.3
MONOCYTES_79
34.2
MONOCYTES_80
34.1
MONOCYTES_81
33.9
MONOCYTES_82
33.8
MONOCYTES_83
33.4
MONOCYTES_84
33.4
MONOCYTES_85
33.3
MONOCYTES_86
32.4
MONOCYTES_87
32.3
MONOCYTES_88
31.5
MONOCYTES_89
31.2
MONOCYTES_90
31.0
MONOCYTES_91
30.3
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Non-classical monocyte TPM: 57.0
Samples: 90
Max TPM: 77.3
Min TPM: 40.6
M2_1
77.3
M2_2
72.3
M2_3
71.3
M2_4
71.0
M2_5
69.8
M2_6
69.7
M2_7
68.9
M2_8
67.8
M2_9
67.3
M2_10
67.2
M2_11
66.9
M2_12
66.8
M2_13
66.7
M2_14
66.6
M2_15
64.3
M2_16
63.7
M2_17
63.6
M2_18
63.3
M2_19
62.7
M2_20
62.3
M2_21
62.3
M2_22
62.2
M2_23
61.7
M2_24
61.5
M2_25
61.4
M2_26
61.4
M2_27
60.8
M2_28
60.6
M2_29
60.3
M2_30
60.2
M2_31
59.5
M2_32
59.1
M2_33
58.8
M2_34
58.7
M2_35
57.9
M2_36
57.4
M2_37
57.4
M2_38
57.0
M2_39
56.8
M2_40
56.6
M2_41
56.2
M2_42
56.0
M2_43
56.0
M2_44
56.0
M2_45
56.0
M2_46
55.6
M2_47
55.3
M2_48
55.2
M2_49
55.1
M2_50
55.0
M2_51
55.0
M2_52
54.9
M2_53
54.8
M2_54
54.8
M2_55
54.8
M2_56
54.6
M2_57
54.4
M2_58
54.2
M2_59
54.1
M2_60
53.8
M2_61
53.4
M2_62
53.2
M2_63
52.8
M2_64
52.4
M2_65
52.3
M2_66
52.1
M2_67
52.0
M2_68
52.0
M2_69
52.0
M2_70
52.0
M2_71
51.9
M2_72
51.5
M2_73
51.3
M2_74
51.1
M2_75
50.7
M2_76
50.7
M2_77
50.3
M2_78
50.2
M2_79
50.1
M2_80
49.9
M2_81
48.7
M2_82
48.6
M2_83
47.9
M2_84
47.7
M2_85
47.5
M2_86
46.2
M2_87
45.8
M2_88
43.7
M2_89
41.4
M2_90
40.6
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