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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • MDH1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:310.9 nTPM
FANTOM5:286.9 Scaled Tags Per Million
Pig:182.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA027296Antibody HPA054276Antibody CAB047333
Glial cells Not detectedNot detectedNot detected
Neuronal cells MediumMediumMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 310.9
Samples: 300

Max nTPM: 1049.3
Min nTPM: 81.9
Std nTPM: 167.3
Median nTPM: 295.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1049.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 859.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 795.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 771.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 737.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 699.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 657.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 644.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 643.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 638.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 624.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 617.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 614.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 610.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 610.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 588.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 586.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 577.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 572.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 570.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 569.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 565.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 550.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 544.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 536.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 536.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 534.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 528.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 527.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 525.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 523.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 522.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 520.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 518.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 517.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 511.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 507.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 504.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 502.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 499.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 498.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 497.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 494.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 492.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 488.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 488.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 486.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 484.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 483.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 481.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 481.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 478.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 476.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 475.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 471.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 470.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 468.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 467.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 462.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 459.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 458.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 453.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 451.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 446.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 445.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 445.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 439.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 438.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 434.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 434.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 433.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 431.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 429.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 428.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 428.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 427.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 424.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 424.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 422.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 420.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 420.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 419.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 418.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 416.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 416.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 416.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 413.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 411.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 410.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 403.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 403.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 397.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 396.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 394.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 394.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 394.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 390.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 388.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 388.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 387.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 386.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 385.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 385.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 384.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 380.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 375.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 373.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 371.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 371.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 370.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 369.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 364.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 363.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 360.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 357.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 357.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 354.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 352.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 352.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 350.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 349.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 349.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 349.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 345.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 342.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 339.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 331.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 330.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 324.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 324.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 323.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 320.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 319.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 319.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 314.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 312.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 312.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 311.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 310.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 310.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 310.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 304.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 303.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 302.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 300.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 300.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 298.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 296.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 296.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 295.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 295.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 295.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 294.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 288.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 288.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 285.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 283.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 282.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 279.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 279.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 278.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 278.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 273.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 272.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 271.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 270.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 269.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 264.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 258.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 255.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 254.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 252.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 252.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 250.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 249.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 249.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 245.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 245.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 244.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 238.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 234.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 229.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 227.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 225.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 223.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 223.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 218.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 218.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 217.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 216.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 214.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 213.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 213.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 213.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 212.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 212.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 210.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 208.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 203.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 201.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 196.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 194.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 192.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 191.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 191.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 190.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 188.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 185.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 185.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 184.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 183.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 180.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 179.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 176.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 176.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 175.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 174.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 170.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 170.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 166.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 163.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 162.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 161.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 160.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 160.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 158.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 155.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 152.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 152.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 152.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 149.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 148.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 147.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 147.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 146.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 145.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 144.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 144.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 143.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 141.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 140.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 139.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 137.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 135.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 134.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 131.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 131.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 130.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 129.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 128.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 128.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 128.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 126.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 126.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 126.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 126.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 124.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 122.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 122.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 121.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 120.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 119.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 119.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 119.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 119.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 118.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 118.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 117.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 117.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 116.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 116.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 116.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 116.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 114.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 112.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 111.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 111.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 111.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 110.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 109.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 108.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 108.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 106.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 103.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 101.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 100.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 100.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 99.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 97.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 95.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 95.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 95.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 94.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 92.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 91.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 91.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 84.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 82.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 81.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

286.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 286.9
FF:10164-103B2 76 years, female 286.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.6
Pig sample Sample description nTPM
Caudate
nTPM: 182.6
Samples: 4

Max nTPM: 209.2
Min nTPM: 155.9
Sample A Female 155.9
Sample B Female 178.5
Sample C Male 209.2
Sample D Male 186.9

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