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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • EVOLUTION

  • CCDC88C
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN43 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:47.5 nTPM
GTEx:22.6 nTPM
FANTOM5:35.4 Scaled Tags Per Million
Pig:42.8 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.5
Sample id Sample description nTPM
Putamen
nTPM: 47.5
1838 Male, age 80, right hemisphere 61.8
2489 Female, age 72, unknown 57.8
1829 Male, age 74, unknown 55.5
2466 Female, age 79, unknown 55.3
1937 Female, age 91, right hemisphere 45.6
2647 Male, age 75, left hemisphere 29.4
2482 Female, age 94, left hemisphere 26.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.6
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 22.6
Samples: 254

Max nTPM: 67.6
Min nTPM: 2.6
Std nTPM: 12.1
Median nTPM: 23.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 67.6
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 63.7
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 52.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 51.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 46.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 45.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 43.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 42.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 42.2
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 41.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 41.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 41.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 40.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 40.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 40.5
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 40.2
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 39.3
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 39.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 38.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 38.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 38.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 38.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 38.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 38.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 37.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 37.3
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 37.1
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 37.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 36.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 36.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 36.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 36.5
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 36.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 36.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 36.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 36.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 36.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 35.9
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 35.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 35.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 35.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 35.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 34.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 34.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 34.5
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 34.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 34.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 34.0
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 34.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 33.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 33.6
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 33.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 33.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 33.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 33.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 33.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 32.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 32.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 32.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 32.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 32.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 32.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 32.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 32.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 32.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 32.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 32.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 32.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 31.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 31.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 31.4
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 31.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 31.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 30.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 30.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 30.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 30.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 30.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 30.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 29.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 29.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 29.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 29.7
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 29.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 29.6
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 29.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 29.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 29.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 29.1
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 29.0
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 28.5
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 28.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 28.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 27.9
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 26.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 26.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 26.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 26.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 26.4
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 26.3
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 25.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 25.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 25.7
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 25.7
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 25.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 25.5
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 25.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 25.4
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 25.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 25.2
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 25.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 25.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 24.9
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 24.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 24.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 24.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 24.6
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 24.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 24.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 24.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 24.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 24.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 24.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 24.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 23.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 23.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 23.3
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 23.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 23.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 22.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 22.6
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 22.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 22.2
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 22.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 21.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 21.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 21.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 21.0
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 20.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 20.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 19.8
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 19.6
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 19.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 19.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 19.0
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 19.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 18.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 18.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 18.2
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 18.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 18.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 18.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 17.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 17.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 17.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 17.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 16.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 16.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 16.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 16.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 16.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 16.1
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 16.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 16.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 16.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 15.9
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 15.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 15.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 15.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 15.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 15.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 15.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 14.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 14.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 14.6
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 14.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 14.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 14.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 14.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 13.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 13.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 13.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 13.2
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 12.9
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 12.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 12.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 12.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 12.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 12.2
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 11.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 11.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 11.6
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 11.2
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 11.0
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 11.0
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 10.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 10.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 10.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 10.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 10.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 10.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 10.2
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 9.6
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 9.6
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 9.4
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 9.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 9.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 9.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 9.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 8.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 8.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 8.6
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 8.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 8.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 8.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 8.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 8.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 8.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 7.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 7.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 7.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 7.6
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 7.5
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 7.5
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 7.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 7.1
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 7.0
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 6.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 6.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 6.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 6.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 6.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 6.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 6.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 6.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 6.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 5.9
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 5.9
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 5.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 5.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 5.3
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 5.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 5.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 5.1
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 4.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 4.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 4.1
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 4.1
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 4.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 4.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 3.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 3.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 2.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 35.4
FF:10176-103C5 60 years, female 35.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.8
Pig sample Sample description nTPM
Putamen
nTPM: 42.8
Samples: 3

Max nTPM: 48.2
Min nTPM: 37.3
Sample B Female 37.3
Sample C Male 42.8
Sample D Male 48.2

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