A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.3
nTPM
Monaco:
59.8
nTPM
Schmiedel:
74.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.3
HPA sample
nTPM
Classical monocyte nTPM: 3.3
Samples: 6
Max nTPM: 4.7
Min nTPM: 2.1
P10809_1003
4.0
P10809_1020
2.1
P10809_1039
4.7
P10809_1058
2.2
P10809_1080
2.4
P10809_1107
4.2
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 3.6
Min nTPM: 1.0
P10809_1004
3.6
P10809_1023
1.0
P10809_1042
1.7
P10809_1061
1.0
P10809_1081
2.6
P10809_1108
1.1
Non-classical monocyte nTPM: 3.0
Samples: 5
Max nTPM: 5.4
Min nTPM: 1.3
P10809_1005
4.1
P10809_1053
5.4
P10809_1072
1.3
P10809_1082
2.9
P10809_1109
1.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.8
Monaco sample
nTPM
Classical monocyte nTPM: 32.8
Samples: 4
Max nTPM: 35.8
Min nTPM: 28.8
RHH5313_R3680
35.8
RHH5221_R3593
32.6
RHH5250_R3622
33.8
RHH5279_R3651
28.8
Intermediate monocyte nTPM: 59.8
Samples: 4
Max nTPM: 90.3
Min nTPM: 36.6
RHH5314_R3681
45.0
RHH5222_R3594
67.3
RHH5251_R3623
90.3
RHH5280_R3652
36.6
Non-classical monocyte nTPM: 52.3
Samples: 4
Max nTPM: 70.3
Min nTPM: 39.4
RHH5315_R3682
50.2
RHH5223_R3595
49.4
RHH5252_R3624
70.3
RHH5281_R3653
39.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.0
Schmiedel sample id
TPM
Classical monocyte TPM: 40.5
Samples: 91
Max TPM: 61.6
Min TPM: 23.5
MONOCYTES_1
61.6
MONOCYTES_2
60.2
MONOCYTES_3
58.1
MONOCYTES_4
54.5
MONOCYTES_5
54.2
MONOCYTES_6
52.6
MONOCYTES_7
51.2
MONOCYTES_8
51.1
MONOCYTES_9
50.8
MONOCYTES_10
49.5
MONOCYTES_11
49.1
MONOCYTES_12
48.5
MONOCYTES_13
47.9
MONOCYTES_14
47.5
MONOCYTES_15
47.5
MONOCYTES_16
47.4
MONOCYTES_17
47.1
MONOCYTES_18
47.0
MONOCYTES_19
46.8
MONOCYTES_20
46.1
MONOCYTES_21
45.7
MONOCYTES_22
45.4
MONOCYTES_23
45.3
MONOCYTES_24
44.5
MONOCYTES_25
44.4
MONOCYTES_26
44.2
MONOCYTES_27
44.2
MONOCYTES_28
44.0
MONOCYTES_29
43.9
MONOCYTES_30
43.7
MONOCYTES_31
43.6
MONOCYTES_32
43.0
MONOCYTES_33
42.9
MONOCYTES_34
42.9
MONOCYTES_35
42.9
MONOCYTES_36
42.3
MONOCYTES_37
42.2
MONOCYTES_38
42.1
MONOCYTES_39
42.1
MONOCYTES_40
42.1
MONOCYTES_41
41.3
MONOCYTES_42
41.0
MONOCYTES_43
40.9
MONOCYTES_44
40.5
MONOCYTES_45
40.4
MONOCYTES_46
40.3
MONOCYTES_47
40.2
MONOCYTES_48
39.4
MONOCYTES_49
39.3
MONOCYTES_50
39.1
MONOCYTES_51
39.0
MONOCYTES_52
38.8
MONOCYTES_53
38.4
MONOCYTES_54
38.4
MONOCYTES_55
38.2
MONOCYTES_56
38.0
MONOCYTES_57
37.9
MONOCYTES_58
37.7
MONOCYTES_59
37.5
MONOCYTES_60
37.5
MONOCYTES_61
37.5
MONOCYTES_62
37.3
MONOCYTES_63
36.8
MONOCYTES_64
36.6
MONOCYTES_65
36.3
MONOCYTES_66
35.9
MONOCYTES_67
35.4
MONOCYTES_68
35.1
MONOCYTES_69
35.0
MONOCYTES_70
34.8
MONOCYTES_71
34.6
MONOCYTES_72
34.4
MONOCYTES_73
34.4
MONOCYTES_74
34.0
MONOCYTES_75
33.7
MONOCYTES_76
33.7
MONOCYTES_77
33.2
MONOCYTES_78
33.1
MONOCYTES_79
32.5
MONOCYTES_80
31.5
MONOCYTES_81
31.2
MONOCYTES_82
31.0
MONOCYTES_83
30.8
MONOCYTES_84
30.7
MONOCYTES_85
30.1
MONOCYTES_86
30.0
MONOCYTES_87
28.7
MONOCYTES_88
28.3
MONOCYTES_89
25.6
MONOCYTES_90
25.3
MONOCYTES_91
23.5
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Non-classical monocyte TPM: 74.0
Samples: 90
Max TPM: 110.2
Min TPM: 45.4
M2_1
110.2
M2_2
108.1
M2_3
108.1
M2_4
99.0
M2_5
98.8
M2_6
95.8
M2_7
95.3
M2_8
94.0
M2_9
93.1
M2_10
93.0
M2_11
92.7
M2_12
92.3
M2_13
91.7
M2_14
91.3
M2_15
90.7
M2_16
88.0
M2_17
87.2
M2_18
87.1
M2_19
86.5
M2_20
86.5
M2_21
86.2
M2_22
86.2
M2_23
86.1
M2_24
86.0
M2_25
85.3
M2_26
84.1
M2_27
84.0
M2_28
83.5
M2_29
82.8
M2_30
80.9
M2_31
80.7
M2_32
80.6
M2_33
78.7
M2_34
78.5
M2_35
77.6
M2_36
77.3
M2_37
77.2
M2_38
77.0
M2_39
76.8
M2_40
76.6
M2_41
75.2
M2_42
74.9
M2_43
74.9
M2_44
74.8
M2_45
74.7
M2_46
73.9
M2_47
72.8
M2_48
72.6
M2_49
72.0
M2_50
71.7
M2_51
71.7
M2_52
71.7
M2_53
70.7
M2_54
70.4
M2_55
69.6
M2_56
69.5
M2_57
69.1
M2_58
68.6
M2_59
67.0
M2_60
66.7
M2_61
66.2
M2_62
64.8
M2_63
64.6
M2_64
62.8
M2_65
62.6
M2_66
62.6
M2_67
62.4
M2_68
62.1
M2_69
61.5
M2_70
61.3
M2_71
61.2
M2_72
61.1
M2_73
60.1
M2_74
58.9
M2_75
58.6
M2_76
58.4
M2_77
56.8
M2_78
56.1
M2_79
56.1
M2_80
55.6
M2_81
53.9
M2_82
53.4
M2_83
51.3
M2_84
51.0
M2_85
50.5
M2_86
48.5
M2_87
48.2
M2_88
48.0
M2_89
47.2
M2_90
45.4
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