A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
990.5
nTPM
Monaco:
512.1
nTPM
Schmiedel:
136.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
990.5
HPA sample
nTPM
Classical monocyte nTPM: 418.3
Samples: 6
Max nTPM: 569.2
Min nTPM: 304.2
P10809_1003
353.1
P10809_1020
439.7
P10809_1039
569.2
P10809_1058
304.2
P10809_1080
389.4
P10809_1107
453.9
Intermediate monocyte nTPM: 749.5
Samples: 6
Max nTPM: 977.1
Min nTPM: 472.9
P10809_1004
611.4
P10809_1023
957.8
P10809_1042
977.1
P10809_1061
644.4
P10809_1081
472.9
P10809_1108
833.6
Non-classical monocyte nTPM: 990.5
Samples: 5
Max nTPM: 1176.0
Min nTPM: 699.1
P10809_1005
741.1
P10809_1053
1165.8
P10809_1072
1176.0
P10809_1082
699.1
P10809_1109
1170.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
512.1
Monaco sample
nTPM
Classical monocyte nTPM: 262.2
Samples: 4
Max nTPM: 296.9
Min nTPM: 244.1
RHH5313_R3680
296.9
RHH5221_R3593
255.7
RHH5250_R3622
252.3
RHH5279_R3651
244.1
Intermediate monocyte nTPM: 461.1
Samples: 4
Max nTPM: 543.4
Min nTPM: 395.6
RHH5314_R3681
543.4
RHH5222_R3594
416.3
RHH5251_R3623
395.6
RHH5280_R3652
489.2
Non-classical monocyte nTPM: 512.1
Samples: 4
Max nTPM: 635.3
Min nTPM: 425.9
RHH5315_R3682
635.3
RHH5223_R3595
450.6
RHH5252_R3624
425.9
RHH5281_R3653
536.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
136.1
Schmiedel sample id
TPM
Classical monocyte TPM: 75.2
Samples: 91
Max TPM: 109.7
Min TPM: 55.8
MONOCYTES_1
109.7
MONOCYTES_2
99.1
MONOCYTES_3
98.8
MONOCYTES_4
95.6
MONOCYTES_5
93.5
MONOCYTES_6
92.8
MONOCYTES_7
92.3
MONOCYTES_8
90.7
MONOCYTES_9
90.6
MONOCYTES_10
90.6
MONOCYTES_11
89.9
MONOCYTES_12
88.0
MONOCYTES_13
87.7
MONOCYTES_14
87.3
MONOCYTES_15
85.5
MONOCYTES_16
85.2
MONOCYTES_17
85.1
MONOCYTES_18
84.8
MONOCYTES_19
84.8
MONOCYTES_20
83.4
MONOCYTES_21
83.3
MONOCYTES_22
83.1
MONOCYTES_23
82.8
MONOCYTES_24
82.5
MONOCYTES_25
82.2
MONOCYTES_26
81.6
MONOCYTES_27
80.6
MONOCYTES_28
80.4
MONOCYTES_29
80.4
MONOCYTES_30
80.2
MONOCYTES_31
80.2
MONOCYTES_32
79.9
MONOCYTES_33
79.9
MONOCYTES_34
79.8
MONOCYTES_35
79.0
MONOCYTES_36
78.8
MONOCYTES_37
77.1
MONOCYTES_38
76.9
MONOCYTES_39
75.8
MONOCYTES_40
75.8
MONOCYTES_41
75.7
MONOCYTES_42
75.4
MONOCYTES_43
74.8
MONOCYTES_44
74.6
MONOCYTES_45
74.5
MONOCYTES_46
74.3
MONOCYTES_47
74.3
MONOCYTES_48
74.0
MONOCYTES_49
73.6
MONOCYTES_50
73.6
MONOCYTES_51
72.6
MONOCYTES_52
72.3
MONOCYTES_53
72.2
MONOCYTES_54
71.8
MONOCYTES_55
71.2
MONOCYTES_56
70.9
MONOCYTES_57
70.7
MONOCYTES_58
70.6
MONOCYTES_59
69.6
MONOCYTES_60
69.3
MONOCYTES_61
68.8
MONOCYTES_62
68.0
MONOCYTES_63
67.9
MONOCYTES_64
67.9
MONOCYTES_65
67.5
MONOCYTES_66
67.2
MONOCYTES_67
67.0
MONOCYTES_68
66.5
MONOCYTES_69
66.3
MONOCYTES_70
66.3
MONOCYTES_71
66.1
MONOCYTES_72
66.0
MONOCYTES_73
65.5
MONOCYTES_74
65.4
MONOCYTES_75
65.0
MONOCYTES_76
64.2
MONOCYTES_77
64.0
MONOCYTES_78
64.0
MONOCYTES_79
63.5
MONOCYTES_80
62.5
MONOCYTES_81
62.1
MONOCYTES_82
62.0
MONOCYTES_83
61.3
MONOCYTES_84
61.2
MONOCYTES_85
60.6
MONOCYTES_86
60.0
MONOCYTES_87
59.4
MONOCYTES_88
58.8
MONOCYTES_89
57.8
MONOCYTES_90
56.0
MONOCYTES_91
55.8
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Non-classical monocyte TPM: 136.1
Samples: 90
Max TPM: 173.0
Min TPM: 101.5
M2_1
173.0
M2_2
172.4
M2_3
169.7
M2_4
166.8
M2_5
165.8
M2_6
164.1
M2_7
162.6
M2_8
161.6
M2_9
161.4
M2_10
158.4
M2_11
157.8
M2_12
157.7
M2_13
156.1
M2_14
153.9
M2_15
152.5
M2_16
150.9
M2_17
150.1
M2_18
150.0
M2_19
150.0
M2_20
149.2
M2_21
149.0
M2_22
148.3
M2_23
148.3
M2_24
148.0
M2_25
147.0
M2_26
146.7
M2_27
145.4
M2_28
145.1
M2_29
144.6
M2_30
141.2
M2_31
140.6
M2_32
140.3
M2_33
140.2
M2_34
139.2
M2_35
138.8
M2_36
138.1
M2_37
138.0
M2_38
138.0
M2_39
137.9
M2_40
137.6
M2_41
137.5
M2_42
137.4
M2_43
136.2
M2_44
136.0
M2_45
135.8
M2_46
135.4
M2_47
134.9
M2_48
133.9
M2_49
133.2
M2_50
133.1
M2_51
133.1
M2_52
132.9
M2_53
132.6
M2_54
132.3
M2_55
132.0
M2_56
131.9
M2_57
131.7
M2_58
131.7
M2_59
131.5
M2_60
131.3
M2_61
130.4
M2_62
128.9
M2_63
128.7
M2_64
128.2
M2_65
128.1
M2_66
127.8
M2_67
126.7
M2_68
123.7
M2_69
122.4
M2_70
121.7
M2_71
121.2
M2_72
121.1
M2_73
121.0
M2_74
120.8
M2_75
120.0
M2_76
119.6
M2_77
117.8
M2_78
116.8
M2_79
115.9
M2_80
115.9
M2_81
113.6
M2_82
112.5
M2_83
112.1
M2_84
109.7
M2_85
109.3
M2_86
108.2
M2_87
107.5
M2_88
105.9
M2_89
104.5
M2_90
101.5
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