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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • MATR3
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:152.1 nTPM
HPA Brain:244.7 nTPM
GTEx:152.1 nTPM
FANTOM5:325.6 Scaled Tags Per Million
Macaque:234.7 nTPM
Mouse:183.1 nTPM
Rat:143.5 nTPM
Pig:222.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA036564Antibody HPA036565Antibody CAB033552
Glial cells HighMediumLow
Neuronal cells HighHighHigh






HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 16849
Sample Intensity
Hippocampal formation_01
15924
Hippocampal formation_02
14845
Hippocampal formation_03
5497
Hippocampal formation_04
17773
Hippocampal formation_05
24282
Hippocampal formation_06
24141

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.7
Sample id Sample description nTPM
Dentate gyrus
nTPM: 186.8
1927 Female, age 91, both hemispheres 230.6
2010 Male, age 76, both hemispheres 197.6
2246 Female, age 85, both hemispheres 191.7
2528 Male, age 74, both hemispheres 184.5
2531 Female, age 67, both hemispheres 170.4
2530 Female, age 94, left hemisphere 146.3
Entorhinal gyrus
nTPM: 194.2
1938 Female, age 85, left hemisphere 252.8
2764 Male, age 80, right hemisphere 202.0
1787 Male, age 76, left hemisphere 201.1
2117 Female, age 91, right hemisphere 179.8
2686 Male, age 75, right hemisphere 166.9
2613 Female, age 94, left hemisphere 162.3
Hippocampus, CA1
nTPM: 200.7
2749 Male, age 80, left hemisphere 248.6
1873 Female, age 85, both hemispheres 210.8
2045 Male, age 76, both hemispheres 190.8
2527 Male, age 74, both hemispheres 187.6
2082 Female, age 91, right hemisphere 165.6
Hippocampus, CA2
nTPM: 187.4
1892 Male, age 76, both hemispheres 238.7
2249 Male, age 74, both hemispheres 195.0
1963 Male, age 80, left hemisphere 187.0
1940 Female, age 85, left hemisphere 180.4
2113 Female, age 91, right hemisphere 165.2
2437 Female, age 94, left hemisphere 158.2
Hippocampus, CA3
nTPM: 191.2
2137 Male, age 80, left hemisphere 234.0
1867 Male, age 76, both hemispheres 209.3
2436 Male, age 74, both hemispheres 192.4
1891 Female, age 85, both hemispheres 191.0
2620 Female, age 94, left hemisphere 182.9
2861 Female, age 67, both hemispheres 137.8
Parahippocampal cortex
nTPM: 197.8
1850 Male, age 80, both hemispheres 273.9
1933 Female, age 85, both hemispheres 238.6
1990 Female, age 91, right hemisphere 218.9
2532 Female, age 72, left hemisphere 195.3
2250 Female, age 67, right hemisphere 195.1
2245 Female, age 91, both hemispheres 191.7
2018 Male, age 76, both hemispheres 185.4
2693 Female, age 94, both hemispheres 184.7
2692 Male, age 74, both hemispheres 151.7
2622 Female, age 67, right hemisphere 142.9
Perirhinal gyrus
nTPM: 244.7
1841 Female, age 85, right hemisphere 278.6
1794 Male, age 80, right hemisphere 267.8
1847 Female, age 91, left hemisphere 260.8
2848 Male, age 76, right hemisphere 221.3
2521 Female, age 94, right hemisphere 194.8
Subiculum
nTPM: 179.3
1977 Female, age 85, both hemispheres 212.7
1901 Male, age 80, both hemispheres 212.2
2438 Female, age 94, left hemisphere 178.9
2042 Male, age 76, both hemispheres 171.6
2619 Male, age 74, both hemispheres 151.8
2729 Female, age 91, right hemisphere 148.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 152.1
Samples: 255

Max nTPM: 371.2
Min nTPM: 68.1
Std nTPM: 35.0
Median nTPM: 148.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 371.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 245.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 241.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 232.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 224.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 220.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 217.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 215.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 211.8
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 211.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 210.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 210.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 209.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 209.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 208.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 207.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 203.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 201.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 201.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 201.4
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 201.0
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 200.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 200.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 197.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 197.8
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 197.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 195.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 195.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 194.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 194.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 194.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 194.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 192.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 192.4
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 191.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 191.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 191.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 189.3
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 188.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 188.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 187.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 187.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 187.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 185.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 185.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 184.4
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 184.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 183.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 180.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 180.3
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 179.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 179.4
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 177.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 177.5
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 177.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 175.1
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 175.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 174.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 174.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 174.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 173.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 173.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 173.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 173.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 173.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 173.0
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 172.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 171.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 171.4
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 171.0
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 170.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 170.2
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 169.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 169.8
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 168.9
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 168.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 168.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 168.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 167.5
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 167.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 166.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 166.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 166.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 166.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 166.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 165.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 164.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 163.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 163.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 162.0
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 162.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 161.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 161.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 160.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 160.1
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 159.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 158.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 158.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 158.2
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 158.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 157.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 156.7
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 156.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 156.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 155.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 155.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 155.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 154.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 154.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 154.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 154.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 154.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 154.2
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 153.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 153.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 153.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 153.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 153.3
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 152.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 152.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 151.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 150.7
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 150.5
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 150.0
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 149.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 149.0
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 148.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 148.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 148.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 147.9
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 146.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 145.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 144.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 144.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 144.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 144.2
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 143.3
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 143.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 142.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 142.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 142.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 142.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 142.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 141.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 141.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 140.6
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 140.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 140.1
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 139.9
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 138.9
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 138.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 138.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 138.6
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 138.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 137.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 137.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 137.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 136.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 136.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 136.4
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 136.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 136.3
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 135.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 135.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 135.6
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 135.6
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 135.2
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 135.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 134.8
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 134.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 134.5
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 134.4
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 134.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 134.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 134.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 133.6
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 133.6
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 133.6
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 132.4
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 131.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 131.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 130.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 130.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 130.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 129.9
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 129.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 129.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 129.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 129.0
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 128.9
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 128.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 128.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 128.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 127.8
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 127.6
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 127.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 126.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 126.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 125.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 125.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 125.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 124.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 124.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 124.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 123.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 122.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 121.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 120.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 120.8
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 120.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 120.4
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 120.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 120.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 120.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 120.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 119.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 119.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 119.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 118.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 118.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 117.8
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 117.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 117.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 116.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 114.5
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 113.8
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 113.6
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 112.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 111.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 111.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 111.0
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 110.7
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 110.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 109.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 109.0
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 108.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 107.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 107.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 106.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 106.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 105.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 105.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 104.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 103.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 103.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 102.7
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 100.7
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 99.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 97.8
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 92.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 91.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 90.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 87.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 72.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 68.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

325.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 325.6
FF:10169-103B7 60 years, female 421.6
FF:10153-102I9 76 years, female 229.5

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.7
Macaque sample Sample description nTPM
Subiculum
nTPM: 215.2
Samples: 1

Max nTPM: 215.2
Min nTPM: 215.2
Sample A 215.2
Entorhinal cortex
nTPM: 231.0
Samples: 2

Max nTPM: 261.7
Min nTPM: 200.3
Sample A 261.7
Sample B 200.3
Hippocampal formation
nTPM: 234.7
Samples: 4

Max nTPM: 265.8
Min nTPM: 194.9
Sample A 194.9
Sample B 226.6
Sample C 251.5
Sample D 265.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.5
Pig sample Sample description nTPM
Subiculum
nTPM: 211.9
Samples: 4

Max nTPM: 267.5
Min nTPM: 192.8
Sample A Female 267.5
Sample B Female 192.8
Sample C Male 193.7
Sample D Male 193.7
Dorsal hippocampus
nTPM: 222.5
Samples: 4

Max nTPM: 236.4
Min nTPM: 202.8
Sample A Female 236.4
Sample B Female 233.2
Sample C Male 217.5
Sample D Male 202.8
Entorhinal cortex
nTPM: 214.6
Samples: 4

Max nTPM: 244.6
Min nTPM: 187.6
Sample A Female 213.2
Sample B Female 244.6
Sample C Male 213.0
Sample D Male 187.6
Ventral hippocampus
nTPM: 196.2
Samples: 4

Max nTPM: 220.1
Min nTPM: 173.8
Sample A Female 220.1
Sample B Female 188.0
Sample C Male 173.8
Sample D Male 203.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 183.1
Samples: 4

Max nTPM: 200.7
Min nTPM: 165.4
Sample A 173.8
Sample B 192.4
Sample C 165.4
Sample D 200.7
Hippocampal formation
nTPM: 160.9
Samples: 4

Max nTPM: 183.9
Min nTPM: 138.6
Sample A 171.4
Sample B 138.6
Sample C 149.5
Sample D 183.9

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.5
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 124.9
Samples: 4

Max nTPM: 131.0
Min nTPM: 116.1
Sample A 131.0
Sample A 130.3
Sample A 116.1
Sample B 122.4
Ventral hippocampus
nTPM: 143.5
Samples: 4

Max nTPM: 151.1
Min nTPM: 136.8
Sample A 151.1
Sample A 138.8
Sample A 147.1
Sample A 136.8

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