A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.0
nTPM
Monaco:
59.3
nTPM
Schmiedel:
31.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.0
HPA sample
nTPM
Classical monocyte nTPM: 13.0
Samples: 6
Max nTPM: 35.6
Min nTPM: 4.8
P10809_1003
8.5
P10809_1020
12.8
P10809_1039
35.6
P10809_1058
5.0
P10809_1080
4.8
P10809_1107
11.2
Intermediate monocyte nTPM: 8.6
Samples: 6
Max nTPM: 12.8
Min nTPM: 2.7
P10809_1004
12.8
P10809_1023
2.7
P10809_1042
9.7
P10809_1061
10.3
P10809_1081
6.1
P10809_1108
9.8
Non-classical monocyte nTPM: 9.3
Samples: 5
Max nTPM: 16.6
Min nTPM: 0.1
P10809_1005
16.6
P10809_1053
6.4
P10809_1072
0.1
P10809_1082
9.0
P10809_1109
14.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.3
Monaco sample
nTPM
Classical monocyte nTPM: 59.4
Samples: 4
Max nTPM: 68.6
Min nTPM: 50.4
RHH5313_R3680
54.4
RHH5221_R3593
68.6
RHH5250_R3622
50.4
RHH5279_R3651
64.0
Intermediate monocyte nTPM: 52.8
Samples: 4
Max nTPM: 63.1
Min nTPM: 34.0
RHH5314_R3681
63.1
RHH5222_R3594
60.7
RHH5251_R3623
34.0
RHH5280_R3652
53.5
Non-classical monocyte nTPM: 59.1
Samples: 4
Max nTPM: 76.8
Min nTPM: 44.8
RHH5315_R3682
76.8
RHH5223_R3595
55.1
RHH5252_R3624
59.6
RHH5281_R3653
44.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.3
Schmiedel sample id
TPM
Classical monocyte TPM: 22.2
Samples: 91
Max TPM: 31.0
Min TPM: 14.7
MONOCYTES_1
31.0
MONOCYTES_2
30.2
MONOCYTES_3
30.0
MONOCYTES_4
29.6
MONOCYTES_5
29.3
MONOCYTES_6
29.1
MONOCYTES_7
28.7
MONOCYTES_8
28.5
MONOCYTES_9
28.3
MONOCYTES_10
28.0
MONOCYTES_11
28.0
MONOCYTES_12
27.8
MONOCYTES_13
26.9
MONOCYTES_14
26.9
MONOCYTES_15
26.7
MONOCYTES_16
26.6
MONOCYTES_17
26.4
MONOCYTES_18
26.0
MONOCYTES_19
25.8
MONOCYTES_20
25.8
MONOCYTES_21
25.7
MONOCYTES_22
25.6
MONOCYTES_23
25.5
MONOCYTES_24
25.5
MONOCYTES_25
25.3
MONOCYTES_26
24.6
MONOCYTES_27
24.4
MONOCYTES_28
24.2
MONOCYTES_29
24.2
MONOCYTES_30
24.0
MONOCYTES_31
23.9
MONOCYTES_32
23.7
MONOCYTES_33
23.7
MONOCYTES_34
23.5
MONOCYTES_35
23.5
MONOCYTES_36
23.3
MONOCYTES_37
23.2
MONOCYTES_38
23.2
MONOCYTES_39
23.1
MONOCYTES_40
23.0
MONOCYTES_41
23.0
MONOCYTES_42
23.0
MONOCYTES_43
22.9
MONOCYTES_44
22.7
MONOCYTES_45
22.6
MONOCYTES_46
22.3
MONOCYTES_47
22.2
MONOCYTES_48
21.6
MONOCYTES_49
21.5
MONOCYTES_50
21.5
MONOCYTES_51
21.4
MONOCYTES_52
21.4
MONOCYTES_53
21.1
MONOCYTES_54
21.1
MONOCYTES_55
21.0
MONOCYTES_56
20.7
MONOCYTES_57
20.5
MONOCYTES_58
20.5
MONOCYTES_59
20.5
MONOCYTES_60
20.0
MONOCYTES_61
19.9
MONOCYTES_62
19.8
MONOCYTES_63
19.4
MONOCYTES_64
19.1
MONOCYTES_65
19.1
MONOCYTES_66
19.0
MONOCYTES_67
19.0
MONOCYTES_68
19.0
MONOCYTES_69
18.8
MONOCYTES_70
18.8
MONOCYTES_71
18.6
MONOCYTES_72
18.3
MONOCYTES_73
18.2
MONOCYTES_74
18.1
MONOCYTES_75
17.8
MONOCYTES_76
17.5
MONOCYTES_77
17.4
MONOCYTES_78
17.3
MONOCYTES_79
17.2
MONOCYTES_80
17.2
MONOCYTES_81
16.9
MONOCYTES_82
16.6
MONOCYTES_83
16.5
MONOCYTES_84
16.4
MONOCYTES_85
16.1
MONOCYTES_86
16.1
MONOCYTES_87
15.7
MONOCYTES_88
15.2
MONOCYTES_89
15.1
MONOCYTES_90
14.8
MONOCYTES_91
14.7
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Non-classical monocyte TPM: 31.3
Samples: 90
Max TPM: 46.3
Min TPM: 19.7
M2_1
46.3
M2_2
42.2
M2_3
42.1
M2_4
41.5
M2_5
41.1
M2_6
40.6
M2_7
40.2
M2_8
39.9
M2_9
39.8
M2_10
39.0
M2_11
38.1
M2_12
37.4
M2_13
37.3
M2_14
37.0
M2_15
36.3
M2_16
36.2
M2_17
35.6
M2_18
35.4
M2_19
34.8
M2_20
34.2
M2_21
34.1
M2_22
34.0
M2_23
33.8
M2_24
33.6
M2_25
33.5
M2_26
33.4
M2_27
33.4
M2_28
33.2
M2_29
32.9
M2_30
32.8
M2_31
32.8
M2_32
32.6
M2_33
32.6
M2_34
32.2
M2_35
32.0
M2_36
31.5
M2_37
31.5
M2_38
31.4
M2_39
31.3
M2_40
31.2
M2_41
31.1
M2_42
31.0
M2_43
31.0
M2_44
30.9
M2_45
30.8
M2_46
30.8
M2_47
30.5
M2_48
30.4
M2_49
30.4
M2_50
30.4
M2_51
30.2
M2_52
29.7
M2_53
29.4
M2_54
29.3
M2_55
29.3
M2_56
29.3
M2_57
29.2
M2_58
29.0
M2_59
28.9
M2_60
28.9
M2_61
28.9
M2_62
28.8
M2_63
28.7
M2_64
28.3
M2_65
28.3
M2_66
28.2
M2_67
27.8
M2_68
27.7
M2_69
27.3
M2_70
27.3
M2_71
27.1
M2_72
26.8
M2_73
26.7
M2_74
26.3
M2_75
26.2
M2_76
26.2
M2_77
26.1
M2_78
26.1
M2_79
26.0
M2_80
25.7
M2_81
25.6
M2_82
25.3
M2_83
25.0
M2_84
25.0
M2_85
24.8
M2_86
24.8
M2_87
24.7
M2_88
23.0
M2_89
22.8
M2_90
19.7
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