On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA022952
Antibody HPA022970
Glial cells
Not detected
Not detected
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity
77126
Sample
Intensity
Hippocampal formation_01
78330
Hippocampal formation_02
69467
Hippocampal formation_03
42138
Hippocampal formation_04
75923
Hippocampal formation_05
98251
Hippocampal formation_06
81336
HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.1
Sample id
Sample description
nTPM
Dentate gyrus nTPM: 134.4
1927
Female, age 91, both hemispheres
150.3
2010
Male, age 76, both hemispheres
147.0
2530
Female, age 94, left hemisphere
134.4
2246
Female, age 85, both hemispheres
131.9
2528
Male, age 74, both hemispheres
128.7
2531
Female, age 67, both hemispheres
114.0
Entorhinal gyrus nTPM: 134.2
2764
Male, age 80, right hemisphere
151.2
1938
Female, age 85, left hemisphere
148.0
2117
Female, age 91, right hemisphere
132.3
2686
Male, age 75, right hemisphere
128.9
1787
Male, age 76, left hemisphere
125.2
2613
Female, age 94, left hemisphere
119.8
Hippocampus, CA1 nTPM: 145.5
2749
Male, age 80, left hemisphere
192.9
1873
Female, age 85, both hemispheres
149.6
2045
Male, age 76, both hemispheres
131.5
2527
Male, age 74, both hemispheres
130.6
2082
Female, age 91, right hemisphere
123.1
Hippocampus, CA2 nTPM: 138.8
1892
Male, age 76, both hemispheres
165.1
1963
Male, age 80, left hemisphere
164.6
2249
Male, age 74, both hemispheres
137.4
1940
Female, age 85, left hemisphere
124.4
2437
Female, age 94, left hemisphere
121.7
2113
Female, age 91, right hemisphere
119.4
Hippocampus, CA3 nTPM: 126.4
2137
Male, age 80, left hemisphere
162.3
1867
Male, age 76, both hemispheres
148.7
1891
Female, age 85, both hemispheres
134.3
2436
Male, age 74, both hemispheres
114.8
2620
Female, age 94, left hemisphere
106.4
2861
Female, age 67, both hemispheres
91.6
Parahippocampal cortex nTPM: 134.4
1850
Male, age 80, both hemispheres
172.5
1933
Female, age 85, both hemispheres
150.2
1990
Female, age 91, right hemisphere
142.9
2245
Female, age 91, both hemispheres
135.2
2250
Female, age 67, right hemisphere
133.3
2532
Female, age 72, left hemisphere
129.6
2693
Female, age 94, both hemispheres
128.6
2018
Male, age 76, both hemispheres
126.1
2692
Male, age 74, both hemispheres
125.2
2622
Female, age 67, right hemisphere
100.5
Perirhinal gyrus nTPM: 152.1
1794
Male, age 80, right hemisphere
160.5
1841
Female, age 85, right hemisphere
157.0
1847
Female, age 91, left hemisphere
155.4
2521
Female, age 94, right hemisphere
150.1
2848
Male, age 76, right hemisphere
137.7
Subiculum nTPM: 131.2
1977
Female, age 85, both hemispheres
151.9
1901
Male, age 80, both hemispheres
144.2
2042
Male, age 76, both hemispheres
131.2
2438
Female, age 94, left hemisphere
124.7
2619
Male, age 74, both hemispheres
121.7
2729
Female, age 91, right hemisphere
113.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 56.8
Samples: 255
Max nTPM: 89.1
Min nTPM: 35.5
Std nTPM: 9.8
Median nTPM: 55.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
89.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
88.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
87.1
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
81.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
81.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
79.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
79.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
79.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
74.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
74.6
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
74.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
74.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
73.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
73.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
73.5
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
73.4
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
72.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
72.1
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
71.5
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
71.2
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
71.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
70.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
70.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
70.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
69.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
69.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
69.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
69.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
69.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
68.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
68.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
68.3
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
68.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
68.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
67.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
67.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
67.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
66.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
66.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
66.7
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
66.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
66.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
65.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
65.6
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
65.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
65.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
65.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
65.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
65.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
65.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
65.0
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
65.0
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
64.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
64.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
64.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
64.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
64.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
64.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
64.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
63.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
63.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
63.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
63.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
63.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
63.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
63.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
62.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
62.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
62.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
62.3
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
62.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
62.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
62.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
62.0
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
62.0
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
61.7
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
61.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
61.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
61.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
61.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
61.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
60.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
60.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
60.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
60.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
59.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
59.9
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
59.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
59.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
59.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
59.6
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
59.6
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
59.5
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
59.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
59.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
59.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
59.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
59.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
59.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
59.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
58.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
58.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
58.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
58.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
58.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
57.9
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
57.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
57.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
57.6
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
57.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
57.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
57.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
56.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
56.6
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
56.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
56.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
56.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
56.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
56.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
56.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
55.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
55.4
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
55.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
55.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
55.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
55.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
55.3
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
55.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
55.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
55.1
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
55.0
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
54.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
54.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
54.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
54.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
54.6
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
54.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
54.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
54.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
54.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
54.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
54.3
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
54.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
54.2
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
54.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
54.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
54.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
54.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
54.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
53.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
53.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
53.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
53.8
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
53.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
53.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
53.7
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
53.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
53.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
53.6
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
53.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
53.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
53.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
53.1
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
53.1
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
53.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
52.7
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
52.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
52.5
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
52.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
52.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
52.2
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
52.2
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
52.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
52.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
52.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
51.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
51.8
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
51.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
51.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
51.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
51.6
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
51.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
51.3
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
51.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
50.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
50.7
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
50.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
50.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
50.3
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
50.3
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
50.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
50.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
50.2
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
50.2
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
50.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
50.0
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
49.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
49.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
49.5
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
49.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
49.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
48.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
48.5
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
48.5
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
48.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
48.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
48.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
47.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
47.8
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
47.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
47.5
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
47.3
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
46.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
46.9
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
46.9
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
46.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
46.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
46.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
46.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
46.1
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
45.9
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
45.8
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
45.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
45.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
45.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
45.2
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
45.2
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
45.1
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
45.0
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
44.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
44.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
44.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
44.0
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
43.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
43.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
43.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
43.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
43.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
43.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
43.0
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
42.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
42.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
42.2
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
41.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
41.3
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
41.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
40.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
40.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
39.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
38.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
38.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
37.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
36.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
35.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
35.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.5
Macaque sample
Sample description
nTPM
Subiculum nTPM: 167.5
Samples: 1
Max nTPM: 167.5
Min nTPM: 167.5
Sample A
167.5
Entorhinal cortex nTPM: 151.3
Samples: 2
Max nTPM: 172.3
Min nTPM: 130.3
Sample A
172.3
Sample B
130.3
Hippocampal formation nTPM: 158.8
Samples: 4
Max nTPM: 191.5
Min nTPM: 134.4
Sample A
134.4
Sample B
142.9
Sample C
166.5
Sample D
191.5
HIPPOCAMPAL FORMATION - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.3
Pig sample
Sample description
nTPM
Subiculum nTPM: 131.5
Samples: 4
Max nTPM: 151.0
Min nTPM: 123.7
Sample A
Female
151.0
Sample B
Female
123.7
Sample C
Male
125.0
Sample D
Male
126.2
Dorsal hippocampus nTPM: 152.3
Samples: 4
Max nTPM: 174.9
Min nTPM: 130.3
Sample A
Female
174.9
Sample B
Female
159.1
Sample C
Male
144.7
Sample D
Male
130.3
Entorhinal cortex nTPM: 125.3
Samples: 4
Max nTPM: 134.9
Min nTPM: 114.2
Sample A
Female
126.0
Sample B
Female
134.9
Sample C
Male
126.0
Sample D
Male
114.2
Ventral hippocampus nTPM: 130.9
Samples: 4
Max nTPM: 152.2
Min nTPM: 115.2
Sample A
Female
152.2
Sample B
Female
119.4
Sample C
Male
115.2
Sample D
Male
136.9
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 93.8
Samples: 4
Max nTPM: 102.1
Min nTPM: 87.5
Sample A
87.5
Sample B
97.2
Sample C
88.5
Sample D
102.1
Hippocampal formation nTPM: 81.5
Samples: 4
Max nTPM: 88.6
Min nTPM: 73.6
Sample A
84.6
Sample B
73.6
Sample C
79.1
Sample D
88.6
HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.0
Rat sample
Sample description
nTPM
Entorhinal cortex nTPM: 68.2
Samples: 4
Max nTPM: 70.1
Min nTPM: 66.7
Sample A
69.0
Sample A
66.9
Sample A
66.7
Sample B
70.1
Ventral hippocampus nTPM: 73.0
Samples: 4
Max nTPM: 75.6
Min nTPM: 69.9
Sample A
74.8
Sample A
71.5
Sample A
75.6
Sample A
69.9
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The Human Protein Atlas project is funded
