MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.1 nTPM
HPA Brain:279.2 nTPM
GTEx:61.1 nTPM
FANTOM5:127.7 Scaled Tags Per Million
Pig:412.7 nTPM
Mouse:179.9 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 279.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.0
2219 Male, age 76, both hemispheres 255.7
2586 Male, age 75, left hemisphere 198.9
2828 Female, age 72, unknown 198.3
1827 Male, age 72, unknown 196.4
1870 Female, age 42, unknown 175.3
2411 Female, age 72, unknown 165.7
1833 Male, age 53, unknown 149.7
2666 Male, age 74, left hemisphere 141.6
1830 Male, age 51, unknown 141.4
2019 Male, age 18, unknown 136.9
Dorsal raphe nucleus
nTPM: 218.0
2298 Female, age 72, unknown 257.1
2047 Male, age 72, unknown 239.8
2016 Female, age 72, unknown 230.0
2750 Male, age 76, both hemispheres 202.9
1828 Male, age 53, unknown 160.4
Inferior colliculus
nTPM: 192.4
2097 Female, age 72, unknown 209.4
1848 Female, age 42, unknown 201.6
1890 Male, age 53, unknown 180.9
2849 Male, age 72, unknown 177.6
Median raphe nucleus
nTPM: 279.2
2220 Male, age 76, midline 279.2
Periaquaductal grey, anterior
nTPM: 237.8
1947 Male, age 18, unknown 291.4
1795 Male, age 51, unknown 221.7
2502 Female, age 75, unknown 200.2
Periaquaductal grey, dorsal
nTPM: 208.6
1840 Male, age 53, unknown 262.9
1831 Male, age 72, unknown 196.7
2464 Female, age 72, unknown 189.6
2850 Male, age 76, both hemispheres 185.2
Periaquaductal grey, lateral
nTPM: 182.4
2053 Male, age 18, unknown 198.9
2272 Male, age 74, both hemispheres 189.7
2140 Male, age 76, both hemispheres 158.6
Pretectal area
nTPM: 222.3
2273 Male, age 74, both hemispheres 341.0
2224 Female, age 72, unknown 249.0
2407 Male, age 75, both hemispheres 244.1
2667 Female, age 75, unknown 239.5
1815 Male, age 53, unknown 231.9
1816 Male, age 51, unknown 224.8
1944 Female, age 72, unknown 216.6
2825 Male, age 18, unknown 201.5
1817 Female, age 42, unknown 189.8
2007 Male, age 72, unknown 172.4
2316 Male, age 76, right hemisphere 134.8
Red nucleus
nTPM: 139.3
2725 Female, age 75, unknown 188.1
2503 Female, age 72, unknown 185.7
1821 Female, age 72, unknown 170.6
2588 Male, age 74, left hemisphere 145.5
1904 Male, age 53, unknown 137.5
1865 Male, age 51, unknown 133.3
1954 Female, age 42, unknown 133.3
2785 Male, age 18, unknown 130.0
2769 Male, age 72, unknown 126.3
2227 Male, age 72, unknown 123.3
2584 Male, age 75, left hemisphere 108.8
2823 Male, age 76, right hemisphere 89.3
Substantia nigra
nTPM: 217.3
1916 Female, age 42, unknown 303.7
2241 Male, age 72, unknown 292.8
1851 Male, age 51, unknown 265.0
2699 Male, age 18, unknown 214.0
1941 Male, age 53, unknown 213.7
1889 Female, age 72, unknown 204.5
2409 Female, age 72, unknown 204.3
2590 Female, age 75, unknown 162.4
2665 Male, age 74, both hemispheres 157.5
2583 Male, age 75, right hemisphere 155.0
Superior colliculus
nTPM: 200.5
1796 Male, age 53, unknown 234.2
2664 Male, age 75, both hemispheres 228.5
2587 Male, age 74, left hemisphere 216.3
2261 Male, age 18, unknown 205.9
1839 Male, age 51, unknown 205.4
2087 Female, age 72, unknown 205.2
2668 Female, age 75, unknown 199.4
1995 Male, age 72, unknown 193.2
1913 Female, age 42, unknown 171.9
1895 Male, age 76, right hemisphere 144.9
Ventral tegmental area
nTPM: 209.2
1915 Female, age 42, unknown 241.7
2218 Male, age 76, both hemispheres 220.6
2021 Male, age 53, unknown 209.0
2410 Female, age 72, unknown 207.6
1942 Male, age 51, unknown 205.1
2223 Female, age 72, unknown 171.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.1
Samples: 183

Max nTPM: 222.1
Min nTPM: 6.4
Std nTPM: 28.5
Median nTPM: 58.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 222.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 154.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 131.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 129.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 123.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 123.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 122.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 117.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 114.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 110.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 108.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.7
FF:10158-103A5 76 years, female 127.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 412.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 349.8
Samples: 4

Max nTPM: 406.8
Min nTPM: 294.3
Sample A Female 406.8
Sample B Female 294.3
Sample C Male 377.6
Sample D Male 320.3
Midbrain
nTPM: 412.7
Samples: 4

Max nTPM: 633.6
Min nTPM: 302.4
Sample A Female 633.6
Sample B Female 323.7
Sample C Male 391.1
Sample D Male 302.4
Periaqueductal gray
nTPM: 386.1
Samples: 3

Max nTPM: 413.6
Min nTPM: 368.4
Sample B Female 376.3
Sample C Male 413.6
Sample D Male 368.4
Superior colliculi
nTPM: 273.0
Samples: 4

Max nTPM: 331.9
Min nTPM: 149.0
Sample A Female 285.9
Sample B Female 149.0
Sample C Male 331.9
Sample D Male 325.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 179.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.9
Samples: 4

Max nTPM: 191.0
Min nTPM: 161.6
Sample A Male 161.6
Sample B Male 181.7
Sample C Female 191.0
Sample D Female 185.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
416 Antisense, RP_Baylor_102695, Mouse strain C57BL/6J (56 days, male) 2.0
414 Antisense, RP_Baylor_102695, Mouse strain C57BL/6J (56 days, male) 1.5
74300879 Antisense, RP_051219_03_H12, Mouse strain C57BL/6J (56 days, male) 0.5

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