A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.6
nTPM
Monaco:
26.8
nTPM
Schmiedel:
30.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.6
HPA sample
nTPM
Classical monocyte nTPM: 10.3
Samples: 6
Max nTPM: 13.4
Min nTPM: 7.5
P10809_1003
11.7
P10809_1020
11.5
P10809_1039
13.4
P10809_1058
7.5
P10809_1080
7.6
P10809_1107
9.9
Intermediate monocyte nTPM: 12.6
Samples: 6
Max nTPM: 15.6
Min nTPM: 8.8
P10809_1004
12.7
P10809_1023
10.3
P10809_1042
15.6
P10809_1061
13.3
P10809_1081
8.8
P10809_1108
14.9
Non-classical monocyte nTPM: 11.9
Samples: 5
Max nTPM: 15.0
Min nTPM: 8.0
P10809_1005
15.0
P10809_1053
12.7
P10809_1072
11.4
P10809_1082
8.0
P10809_1109
12.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
Monaco sample
nTPM
Classical monocyte nTPM: 26.8
Samples: 4
Max nTPM: 35.9
Min nTPM: 21.2
RHH5313_R3680
21.2
RHH5221_R3593
35.9
RHH5250_R3622
27.3
RHH5279_R3651
22.7
Intermediate monocyte nTPM: 24.8
Samples: 4
Max nTPM: 28.5
Min nTPM: 20.3
RHH5314_R3681
28.5
RHH5222_R3594
24.0
RHH5251_R3623
20.3
RHH5280_R3652
26.4
Non-classical monocyte nTPM: 19.7
Samples: 4
Max nTPM: 21.8
Min nTPM: 16.8
RHH5315_R3682
21.5
RHH5223_R3595
18.7
RHH5252_R3624
16.8
RHH5281_R3653
21.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.1
Schmiedel sample id
TPM
Classical monocyte TPM: 28.2
Samples: 91
Max TPM: 37.3
Min TPM: 20.9
MONOCYTES_1
37.3
MONOCYTES_2
34.6
MONOCYTES_3
34.3
MONOCYTES_4
34.0
MONOCYTES_5
33.4
MONOCYTES_6
33.2
MONOCYTES_7
32.8
MONOCYTES_8
32.5
MONOCYTES_9
32.4
MONOCYTES_10
32.3
MONOCYTES_11
31.7
MONOCYTES_12
31.7
MONOCYTES_13
31.6
MONOCYTES_14
31.4
MONOCYTES_15
31.3
MONOCYTES_16
31.2
MONOCYTES_17
31.1
MONOCYTES_18
31.0
MONOCYTES_19
30.5
MONOCYTES_20
30.3
MONOCYTES_21
30.2
MONOCYTES_22
30.1
MONOCYTES_23
30.1
MONOCYTES_24
30.0
MONOCYTES_25
30.0
MONOCYTES_26
29.8
MONOCYTES_27
29.8
MONOCYTES_28
29.7
MONOCYTES_29
29.6
MONOCYTES_30
29.5
MONOCYTES_31
29.5
MONOCYTES_32
29.5
MONOCYTES_33
29.3
MONOCYTES_34
29.3
MONOCYTES_35
29.2
MONOCYTES_36
29.1
MONOCYTES_37
29.1
MONOCYTES_38
28.8
MONOCYTES_39
28.8
MONOCYTES_40
28.5
MONOCYTES_41
28.5
MONOCYTES_42
28.5
MONOCYTES_43
28.4
MONOCYTES_44
28.3
MONOCYTES_45
28.2
MONOCYTES_46
28.1
MONOCYTES_47
28.1
MONOCYTES_48
28.0
MONOCYTES_49
28.0
MONOCYTES_50
27.9
MONOCYTES_51
27.9
MONOCYTES_52
27.8
MONOCYTES_53
27.8
MONOCYTES_54
27.7
MONOCYTES_55
27.6
MONOCYTES_56
27.6
MONOCYTES_57
27.5
MONOCYTES_58
27.4
MONOCYTES_59
27.4
MONOCYTES_60
27.4
MONOCYTES_61
27.1
MONOCYTES_62
27.1
MONOCYTES_63
27.0
MONOCYTES_64
27.0
MONOCYTES_65
26.8
MONOCYTES_66
26.8
MONOCYTES_67
26.7
MONOCYTES_68
26.6
MONOCYTES_69
26.4
MONOCYTES_70
26.3
MONOCYTES_71
25.9
MONOCYTES_72
25.8
MONOCYTES_73
25.7
MONOCYTES_74
25.7
MONOCYTES_75
25.7
MONOCYTES_76
25.3
MONOCYTES_77
25.2
MONOCYTES_78
25.1
MONOCYTES_79
24.7
MONOCYTES_80
24.7
MONOCYTES_81
24.4
MONOCYTES_82
24.0
MONOCYTES_83
24.0
MONOCYTES_84
23.7
MONOCYTES_85
23.4
MONOCYTES_86
23.4
MONOCYTES_87
23.0
MONOCYTES_88
22.8
MONOCYTES_89
21.2
MONOCYTES_90
21.0
MONOCYTES_91
20.9
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Non-classical monocyte TPM: 30.1
Samples: 90
Max TPM: 38.4
Min TPM: 22.1
M2_1
38.4
M2_2
37.7
M2_3
37.7
M2_4
35.9
M2_5
35.7
M2_6
35.4
M2_7
34.9
M2_8
34.7
M2_9
34.7
M2_10
34.0
M2_11
33.9
M2_12
33.8
M2_13
33.8
M2_14
33.7
M2_15
33.5
M2_16
33.0
M2_17
33.0
M2_18
32.9
M2_19
32.8
M2_20
32.8
M2_21
32.5
M2_22
32.4
M2_23
32.4
M2_24
32.3
M2_25
32.2
M2_26
31.8
M2_27
31.5
M2_28
31.4
M2_29
31.3
M2_30
31.3
M2_31
31.2
M2_32
31.0
M2_33
30.9
M2_34
30.8
M2_35
30.8
M2_36
30.8
M2_37
30.8
M2_38
30.7
M2_39
30.6
M2_40
30.6
M2_41
30.3
M2_42
30.2
M2_43
30.1
M2_44
30.1
M2_45
29.9
M2_46
29.9
M2_47
29.9
M2_48
29.8
M2_49
29.8
M2_50
29.7
M2_51
29.7
M2_52
29.5
M2_53
29.5
M2_54
29.4
M2_55
29.2
M2_56
29.2
M2_57
29.1
M2_58
29.1
M2_59
29.0
M2_60
28.8
M2_61
28.8
M2_62
28.8
M2_63
28.8
M2_64
28.8
M2_65
28.4
M2_66
28.2
M2_67
27.9
M2_68
27.9
M2_69
27.7
M2_70
27.6
M2_71
27.4
M2_72
27.3
M2_73
27.1
M2_74
27.1
M2_75
26.8
M2_76
26.7
M2_77
26.6
M2_78
26.6
M2_79
26.6
M2_80
26.5
M2_81
26.5
M2_82
26.5
M2_83
26.1
M2_84
26.1
M2_85
25.1
M2_86
24.8
M2_87
24.0
M2_88
23.2
M2_89
22.9
M2_90
22.1
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