A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.0
nTPM
Monaco:
27.7
nTPM
Schmiedel:
25.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.0
HPA sample
nTPM
Classical monocyte nTPM: 4.7
Samples: 6
Max nTPM: 6.0
Min nTPM: 3.0
P10809_1003
5.4
P10809_1020
6.0
P10809_1039
5.1
P10809_1058
4.6
P10809_1080
3.0
P10809_1107
4.0
Intermediate monocyte nTPM: 10.0
Samples: 6
Max nTPM: 14.0
Min nTPM: 6.8
P10809_1004
7.3
P10809_1023
14.0
P10809_1042
11.5
P10809_1061
10.5
P10809_1081
6.8
P10809_1108
9.6
Non-classical monocyte nTPM: 7.2
Samples: 5
Max nTPM: 13.6
Min nTPM: 0.0
P10809_1005
8.5
P10809_1053
9.0
P10809_1072
0.0
P10809_1082
4.7
P10809_1109
13.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.7
Monaco sample
nTPM
Classical monocyte nTPM: 15.5
Samples: 4
Max nTPM: 19.1
Min nTPM: 12.2
RHH5313_R3680
16.4
RHH5221_R3593
12.2
RHH5250_R3622
14.1
RHH5279_R3651
19.1
Intermediate monocyte nTPM: 27.7
Samples: 4
Max nTPM: 34.9
Min nTPM: 21.7
RHH5314_R3681
26.0
RHH5222_R3594
28.2
RHH5251_R3623
21.7
RHH5280_R3652
34.9
Non-classical monocyte nTPM: 24.3
Samples: 4
Max nTPM: 31.2
Min nTPM: 20.6
RHH5315_R3682
22.7
RHH5223_R3595
31.2
RHH5252_R3624
20.6
RHH5281_R3653
22.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Schmiedel sample id
TPM
Classical monocyte TPM: 10.8
Samples: 91
Max TPM: 18.1
Min TPM: 6.1
MONOCYTES_1
18.1
MONOCYTES_2
16.3
MONOCYTES_3
15.7
MONOCYTES_4
15.0
MONOCYTES_5
14.6
MONOCYTES_6
14.1
MONOCYTES_7
14.0
MONOCYTES_8
13.9
MONOCYTES_9
13.7
MONOCYTES_10
13.7
MONOCYTES_11
13.4
MONOCYTES_12
13.2
MONOCYTES_13
12.9
MONOCYTES_14
12.8
MONOCYTES_15
12.7
MONOCYTES_16
12.6
MONOCYTES_17
12.6
MONOCYTES_18
12.6
MONOCYTES_19
12.5
MONOCYTES_20
12.5
MONOCYTES_21
12.5
MONOCYTES_22
12.3
MONOCYTES_23
12.3
MONOCYTES_24
12.3
MONOCYTES_25
12.2
MONOCYTES_26
12.0
MONOCYTES_27
11.9
MONOCYTES_28
11.8
MONOCYTES_29
11.8
MONOCYTES_30
11.6
MONOCYTES_31
11.6
MONOCYTES_32
11.4
MONOCYTES_33
11.4
MONOCYTES_34
11.4
MONOCYTES_35
11.2
MONOCYTES_36
11.2
MONOCYTES_37
11.2
MONOCYTES_38
11.1
MONOCYTES_39
11.0
MONOCYTES_40
11.0
MONOCYTES_41
10.9
MONOCYTES_42
10.9
MONOCYTES_43
10.9
MONOCYTES_44
10.8
MONOCYTES_45
10.8
MONOCYTES_46
10.7
MONOCYTES_47
10.6
MONOCYTES_48
10.6
MONOCYTES_49
10.6
MONOCYTES_50
10.5
MONOCYTES_51
10.4
MONOCYTES_52
10.4
MONOCYTES_53
10.4
MONOCYTES_54
10.4
MONOCYTES_55
10.3
MONOCYTES_56
10.3
MONOCYTES_57
10.1
MONOCYTES_58
10.1
MONOCYTES_59
9.9
MONOCYTES_60
9.9
MONOCYTES_61
9.8
MONOCYTES_62
9.7
MONOCYTES_63
9.6
MONOCYTES_64
9.6
MONOCYTES_65
9.4
MONOCYTES_66
9.3
MONOCYTES_67
9.2
MONOCYTES_68
9.1
MONOCYTES_69
9.1
MONOCYTES_70
9.1
MONOCYTES_71
9.0
MONOCYTES_72
8.9
MONOCYTES_73
8.8
MONOCYTES_74
8.7
MONOCYTES_75
8.5
MONOCYTES_76
8.4
MONOCYTES_77
8.4
MONOCYTES_78
8.4
MONOCYTES_79
8.3
MONOCYTES_80
8.3
MONOCYTES_81
8.3
MONOCYTES_82
8.2
MONOCYTES_83
8.2
MONOCYTES_84
8.2
MONOCYTES_85
8.1
MONOCYTES_86
8.0
MONOCYTES_87
7.8
MONOCYTES_88
7.7
MONOCYTES_89
7.0
MONOCYTES_90
6.9
MONOCYTES_91
6.1
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Non-classical monocyte TPM: 25.2
Samples: 90
Max TPM: 36.3
Min TPM: 16.8
M2_1
36.3
M2_2
35.9
M2_3
35.8
M2_4
34.1
M2_5
33.3
M2_6
31.9
M2_7
31.6
M2_8
31.4
M2_9
31.4
M2_10
31.2
M2_11
31.2
M2_12
30.6
M2_13
30.6
M2_14
30.6
M2_15
30.1
M2_16
29.9
M2_17
29.8
M2_18
29.5
M2_19
29.4
M2_20
29.2
M2_21
28.8
M2_22
28.7
M2_23
28.1
M2_24
28.0
M2_25
27.8
M2_26
27.7
M2_27
26.8
M2_28
26.8
M2_29
26.7
M2_30
26.4
M2_31
26.4
M2_32
26.3
M2_33
26.3
M2_34
26.2
M2_35
26.1
M2_36
26.0
M2_37
26.0
M2_38
25.9
M2_39
25.3
M2_40
25.2
M2_41
25.1
M2_42
25.0
M2_43
24.9
M2_44
24.9
M2_45
24.6
M2_46
24.5
M2_47
24.4
M2_48
24.3
M2_49
24.0
M2_50
24.0
M2_51
23.8
M2_52
23.7
M2_53
23.6
M2_54
23.5
M2_55
23.2
M2_56
23.0
M2_57
22.8
M2_58
22.8
M2_59
22.8
M2_60
22.7
M2_61
22.4
M2_62
22.3
M2_63
22.2
M2_64
22.2
M2_65
22.2
M2_66
22.1
M2_67
21.9
M2_68
21.8
M2_69
21.8
M2_70
21.7
M2_71
21.3
M2_72
21.1
M2_73
21.0
M2_74
20.7
M2_75
20.7
M2_76
20.7
M2_77
20.5
M2_78
20.5
M2_79
20.1
M2_80
19.8
M2_81
19.8
M2_82
19.8
M2_83
19.6
M2_84
19.5
M2_85
19.4
M2_86
19.3
M2_87
19.3
M2_88
18.9
M2_89
18.5
M2_90
16.8
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