A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.7
nTPM
Monaco:
99.4
nTPM
Schmiedel:
18.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.7
HPA sample
nTPM
Classical monocyte nTPM: 15.3
Samples: 6
Max nTPM: 18.1
Min nTPM: 11.5
P10809_1003
11.5
P10809_1020
13.5
P10809_1039
17.0
P10809_1058
15.3
P10809_1080
16.3
P10809_1107
18.1
Intermediate monocyte nTPM: 18.7
Samples: 6
Max nTPM: 25.3
Min nTPM: 11.9
P10809_1004
17.9
P10809_1023
25.3
P10809_1042
18.7
P10809_1061
11.9
P10809_1081
21.4
P10809_1108
16.9
Non-classical monocyte nTPM: 17.4
Samples: 5
Max nTPM: 27.4
Min nTPM: 12.1
P10809_1005
12.1
P10809_1053
16.5
P10809_1072
27.4
P10809_1082
15.7
P10809_1109
15.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.4
Monaco sample
nTPM
Classical monocyte nTPM: 86.1
Samples: 4
Max nTPM: 98.9
Min nTPM: 66.7
RHH5313_R3680
98.9
RHH5221_R3593
66.7
RHH5250_R3622
92.4
RHH5279_R3651
86.2
Intermediate monocyte nTPM: 99.4
Samples: 4
Max nTPM: 118.1
Min nTPM: 81.1
RHH5314_R3681
84.7
RHH5222_R3594
81.1
RHH5251_R3623
118.1
RHH5280_R3652
113.6
Non-classical monocyte nTPM: 90.6
Samples: 4
Max nTPM: 136.7
Min nTPM: 64.2
RHH5315_R3682
75.7
RHH5223_R3595
64.2
RHH5252_R3624
85.7
RHH5281_R3653
136.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.0
Schmiedel sample id
TPM
Classical monocyte TPM: 8.7
Samples: 91
Max TPM: 15.3
Min TPM: 4.2
MONOCYTES_1
15.3
MONOCYTES_2
13.9
MONOCYTES_3
13.8
MONOCYTES_4
12.5
MONOCYTES_5
12.3
MONOCYTES_6
11.9
MONOCYTES_7
11.7
MONOCYTES_8
11.5
MONOCYTES_9
11.4
MONOCYTES_10
11.4
MONOCYTES_11
11.3
MONOCYTES_12
11.3
MONOCYTES_13
11.2
MONOCYTES_14
11.0
MONOCYTES_15
10.9
MONOCYTES_16
10.8
MONOCYTES_17
10.8
MONOCYTES_18
10.7
MONOCYTES_19
10.4
MONOCYTES_20
10.4
MONOCYTES_21
10.4
MONOCYTES_22
10.3
MONOCYTES_23
10.2
MONOCYTES_24
10.2
MONOCYTES_25
10.2
MONOCYTES_26
10.0
MONOCYTES_27
10.0
MONOCYTES_28
10.0
MONOCYTES_29
9.8
MONOCYTES_30
9.7
MONOCYTES_31
9.6
MONOCYTES_32
9.5
MONOCYTES_33
9.1
MONOCYTES_34
9.0
MONOCYTES_35
9.0
MONOCYTES_36
9.0
MONOCYTES_37
8.9
MONOCYTES_38
8.9
MONOCYTES_39
8.8
MONOCYTES_40
8.8
MONOCYTES_41
8.7
MONOCYTES_42
8.7
MONOCYTES_43
8.7
MONOCYTES_44
8.5
MONOCYTES_45
8.5
MONOCYTES_46
8.4
MONOCYTES_47
8.4
MONOCYTES_48
8.3
MONOCYTES_49
8.3
MONOCYTES_50
8.2
MONOCYTES_51
8.2
MONOCYTES_52
8.1
MONOCYTES_53
8.1
MONOCYTES_54
8.0
MONOCYTES_55
8.0
MONOCYTES_56
8.0
MONOCYTES_57
8.0
MONOCYTES_58
7.9
MONOCYTES_59
7.8
MONOCYTES_60
7.8
MONOCYTES_61
7.7
MONOCYTES_62
7.5
MONOCYTES_63
7.4
MONOCYTES_64
7.4
MONOCYTES_65
7.4
MONOCYTES_66
7.4
MONOCYTES_67
7.3
MONOCYTES_68
7.2
MONOCYTES_69
7.2
MONOCYTES_70
7.2
MONOCYTES_71
7.1
MONOCYTES_72
7.0
MONOCYTES_73
7.0
MONOCYTES_74
7.0
MONOCYTES_75
6.9
MONOCYTES_76
6.9
MONOCYTES_77
6.8
MONOCYTES_78
6.8
MONOCYTES_79
6.8
MONOCYTES_80
6.7
MONOCYTES_81
6.3
MONOCYTES_82
6.3
MONOCYTES_83
6.1
MONOCYTES_84
6.1
MONOCYTES_85
6.1
MONOCYTES_86
6.1
MONOCYTES_87
5.9
MONOCYTES_88
5.3
MONOCYTES_89
5.2
MONOCYTES_90
4.7
MONOCYTES_91
4.2
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Non-classical monocyte TPM: 18.0
Samples: 90
Max TPM: 27.5
Min TPM: 10.0
M2_1
27.5
M2_2
26.7
M2_3
25.9
M2_4
25.0
M2_5
24.6
M2_6
24.5
M2_7
24.2
M2_8
23.9
M2_9
23.5
M2_10
23.3
M2_11
23.3
M2_12
23.2
M2_13
23.1
M2_14
22.6
M2_15
22.6
M2_16
22.1
M2_17
21.9
M2_18
21.8
M2_19
21.7
M2_20
21.6
M2_21
21.6
M2_22
21.6
M2_23
21.5
M2_24
21.4
M2_25
21.2
M2_26
21.2
M2_27
21.1
M2_28
20.9
M2_29
20.9
M2_30
20.3
M2_31
20.1
M2_32
19.7
M2_33
19.5
M2_34
19.5
M2_35
19.4
M2_36
19.1
M2_37
19.0
M2_38
18.6
M2_39
18.5
M2_40
18.3
M2_41
18.3
M2_42
18.3
M2_43
18.2
M2_44
17.8
M2_45
17.4
M2_46
17.3
M2_47
17.3
M2_48
17.3
M2_49
17.1
M2_50
17.0
M2_51
16.5
M2_52
16.4
M2_53
16.4
M2_54
16.3
M2_55
16.2
M2_56
16.2
M2_57
15.9
M2_58
15.7
M2_59
15.6
M2_60
15.6
M2_61
15.5
M2_62
15.4
M2_63
15.3
M2_64
15.3
M2_65
15.2
M2_66
15.0
M2_67
14.9
M2_68
14.7
M2_69
14.6
M2_70
14.5
M2_71
14.3
M2_72
13.9
M2_73
13.9
M2_74
13.9
M2_75
13.7
M2_76
13.5
M2_77
13.5
M2_78
13.0
M2_79
12.9
M2_80
12.9
M2_81
12.8
M2_82
12.7
M2_83
12.4
M2_84
12.4
M2_85
11.9
M2_86
11.8
M2_87
11.8
M2_88
11.7
M2_89
10.3
M2_90
10.0
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