MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA Brain:88.5 nTPM
GTEx:31.3 nTPM
FANTOM5:12.7 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:17.3 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.1
2586 Male, age 75, left hemisphere 104.6
2666 Male, age 74, left hemisphere 75.6
1830 Male, age 51, unknown 75.4
1870 Female, age 42, unknown 69.0
1833 Male, age 53, unknown 68.0
2828 Female, age 72, unknown 65.6
2019 Male, age 18, unknown 62.4
2411 Female, age 72, unknown 59.1
2219 Male, age 76, both hemispheres 47.6
1827 Male, age 72, unknown 43.7
Dorsal raphe nucleus
nTPM: 81.6
2047 Male, age 72, unknown 105.8
2016 Female, age 72, unknown 86.0
1828 Male, age 53, unknown 79.3
2750 Male, age 76, both hemispheres 75.5
2298 Female, age 72, unknown 61.5
Inferior colliculus
nTPM: 63.6
2849 Male, age 72, unknown 71.8
1890 Male, age 53, unknown 68.3
1848 Female, age 42, unknown 65.8
2097 Female, age 72, unknown 48.5
Median raphe nucleus
nTPM: 88.5
2220 Male, age 76, midline 88.5
Periaquaductal grey, anterior
nTPM: 54.1
2502 Female, age 75, unknown 61.7
1947 Male, age 18, unknown 51.5
1795 Male, age 51, unknown 49.3
Periaquaductal grey, dorsal
nTPM: 68.2
2850 Male, age 76, both hemispheres 103.1
1840 Male, age 53, unknown 59.0
2464 Female, age 72, unknown 56.0
1831 Male, age 72, unknown 54.8
Periaquaductal grey, lateral
nTPM: 73.0
2140 Male, age 76, both hemispheres 93.6
2053 Male, age 18, unknown 70.1
2272 Male, age 74, both hemispheres 55.3
Pretectal area
nTPM: 46.6
2825 Male, age 18, unknown 68.0
2316 Male, age 76, right hemisphere 62.1
2407 Male, age 75, both hemispheres 55.2
1817 Female, age 42, unknown 48.0
2224 Female, age 72, unknown 47.1
2273 Male, age 74, both hemispheres 46.6
1815 Male, age 53, unknown 42.6
2007 Male, age 72, unknown 41.2
1944 Female, age 72, unknown 36.0
2667 Female, age 75, unknown 35.7
1816 Male, age 51, unknown 30.6
Red nucleus
nTPM: 85.5
1954 Female, age 42, unknown 98.6
2227 Male, age 72, unknown 95.6
2588 Male, age 74, left hemisphere 95.1
1865 Male, age 51, unknown 94.6
2769 Male, age 72, unknown 94.5
1904 Male, age 53, unknown 88.2
2584 Male, age 75, left hemisphere 87.4
1821 Female, age 72, unknown 84.6
2503 Female, age 72, unknown 84.3
2823 Male, age 76, right hemisphere 72.8
2725 Female, age 75, unknown 66.3
2785 Male, age 18, unknown 64.4
Substantia nigra
nTPM: 68.8
2699 Male, age 18, unknown 95.1
2665 Male, age 74, both hemispheres 81.0
2583 Male, age 75, right hemisphere 76.3
1941 Male, age 53, unknown 76.0
2590 Female, age 75, unknown 66.8
2241 Male, age 72, unknown 66.7
1851 Male, age 51, unknown 63.8
1916 Female, age 42, unknown 62.2
1889 Female, age 72, unknown 53.1
2409 Female, age 72, unknown 47.3
Superior colliculus
nTPM: 52.7
2668 Female, age 75, unknown 74.2
1839 Male, age 51, unknown 63.6
2587 Male, age 74, left hemisphere 59.1
1913 Female, age 42, unknown 56.2
1995 Male, age 72, unknown 54.6
2664 Male, age 75, both hemispheres 52.1
2087 Female, age 72, unknown 44.6
1895 Male, age 76, right hemisphere 43.7
1796 Male, age 53, unknown 43.2
2261 Male, age 18, unknown 35.9
Ventral tegmental area
nTPM: 75.8
2223 Female, age 72, unknown 104.9
2021 Male, age 53, unknown 80.6
1942 Male, age 51, unknown 80.1
2218 Male, age 76, both hemispheres 72.5
1915 Female, age 42, unknown 59.6
2410 Female, age 72, unknown 57.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 183

Max nTPM: 96.7
Min nTPM: 7.9
Std nTPM: 16.7
Median nTPM: 28.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 96.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 86.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 77.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 74.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 73.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 73.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 71.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 70.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 68.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 67.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 63.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.7
FF:10158-103A5 76 years, female 12.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.2
Samples: 4

Max nTPM: 55.9
Min nTPM: 29.2
Sample A Female 33.9
Sample B Female 29.2
Sample C Male 37.7
Sample D Male 55.9
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 75.5
Min nTPM: 19.7
Sample A Female 75.5
Sample B Female 31.0
Sample C Male 19.7
Sample D Male 26.1
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 26.1
Min nTPM: 24.6
Sample B Female 26.1
Sample C Male 24.6
Sample D Male 25.8
Superior colliculi
nTPM: 31.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 25.4
Sample A Female 32.3
Sample B Female 33.9
Sample C Male 25.4
Sample D Male 35.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 18.5
Min nTPM: 16.5
Sample A Male 17.0
Sample B Male 18.5
Sample C Female 17.0
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69114866 Antisense, RP_050317_02_C01, Mouse strain C57BL/6J (56 days, male) 0.7
70918892 Antisense, RP_050712_04_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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