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  • SAMD4A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:78.3 nTPM
HPA Brain:127.2 nTPM
GTEx:78.3 nTPM
FANTOM5:30.2 Scaled Tags Per Million
Pig:106.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 102.6
2565 Male, age 75, midline 115.4
2048 Male, age 55, midline 109.2
2816 Male, age 47, midline 102.4
2194 Female, age 79, both hemispheres 95.6
1981 Female, age 72, midline 90.4
Cervical spinal cord, dorsal horn
nTPM: 74.2
2173 Female, age 72, unknown 101.9
2296 Male, age 66, both hemispheres 94.3
2069 Male, age 47, both hemispheres 75.5
1877 Male, age 55, unknown 71.0
2721 Male, age 90, both hemispheres 59.9
2297 Male, age 75, both hemispheres 42.8
Cervical spinal cord, ventral horn
nTPM: 127.2
2480 Male, age 75, both hemispheres 167.1
2809 Male, age 90, both hemispheres 161.0
2295 Male, age 66, both hemispheres 115.7
2820 Female, age 79, both hemispheres 111.5
2098 Female, age 72, unknown 108.8
2068 Male, age 55, unknown 99.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 78.3
Samples: 204

Max nTPM: 313.6
Min nTPM: 14.3
Std nTPM: 41.7
Median nTPM: 67.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 313.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 236.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 225.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 223.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 213.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 189.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 186.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 180.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 164.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 164.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 156.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 144.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 143.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 135.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 133.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 132.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 127.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 125.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 125.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 122.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 122.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 122.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 121.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 118.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 116.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 115.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 114.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 112.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 112.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 111.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 110.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 109.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 109.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 109.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 109.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 108.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 108.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 108.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 105.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 105.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 103.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 103.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 103.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 101.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 101.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 100.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 98.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 98.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 97.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 96.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 96.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 95.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 94.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 94.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 94.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 92.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 92.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 91.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 90.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 90.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 89.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 89.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 88.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 87.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 85.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 84.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 84.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 81.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 81.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 81.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 80.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 80.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 80.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 79.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 78.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 78.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 77.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 76.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 76.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 76.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 75.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 75.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 74.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 74.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 74.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 74.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 73.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 73.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 71.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 71.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 71.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 70.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 70.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 70.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 70.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 68.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 68.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 68.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 67.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 67.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 67.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 67.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 67.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 67.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 67.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 67.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 66.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 65.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 65.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 65.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 65.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 65.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 65.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 65.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 65.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 64.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 63.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 62.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 62.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 62.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 61.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 60.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 60.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 60.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 60.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 59.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 57.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 57.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 57.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 57.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 56.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 56.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 55.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 55.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 55.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 55.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 55.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 55.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 54.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 54.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 54.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 54.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 53.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 53.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 53.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 53.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 52.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 52.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 51.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 51.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 51.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 50.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 48.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 48.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 48.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 48.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 47.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 47.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 46.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 46.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 46.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 46.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 46.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 46.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 45.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 45.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 45.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 44.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 44.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 43.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 43.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 42.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 42.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 41.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 41.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 39.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 38.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 38.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 38.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 38.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 37.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 37.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 37.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 36.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 35.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 35.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 34.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 32.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 32.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 32.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 31.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 30.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 29.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 29.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 28.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 23.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 20.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 14.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 14.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 30.2
FF:10181-103D1 60 years, female 40.8
FF:10159-103A6 76 years, female 19.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 79.5
Samples: 4

Max nTPM: 97.2
Min nTPM: 64.6
Sample A Female 64.6
Sample B Female 75.5
Sample C Male 80.5
Sample D Male 97.2
Ventral spinal cord
nTPM: 106.3
Samples: 4

Max nTPM: 167.0
Min nTPM: 82.4
Sample A Female 89.7
Sample B Female 85.9
Sample C Male 82.4
Sample D Male 167.0

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