A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
15.2
nTPM
Schmiedel:
23.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.3
P10809_1003
0.3
P10809_1020
0.7
P10809_1039
0.9
P10809_1058
0.6
P10809_1080
0.5
P10809_1107
0.8
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.5
P10809_1004
0.7
P10809_1023
1.9
P10809_1042
1.5
P10809_1061
0.5
P10809_1081
0.9
P10809_1108
1.8
Non-classical monocyte nTPM: 1.0
Samples: 5
Max nTPM: 2.3
Min nTPM: 0.5
P10809_1005
0.6
P10809_1053
0.5
P10809_1072
0.9
P10809_1082
0.7
P10809_1109
2.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.2
Monaco sample
nTPM
Classical monocyte nTPM: 5.2
Samples: 4
Max nTPM: 10.7
Min nTPM: 2.7
RHH5313_R3680
3.6
RHH5221_R3593
10.7
RHH5250_R3622
3.9
RHH5279_R3651
2.7
Intermediate monocyte nTPM: 13.3
Samples: 4
Max nTPM: 21.6
Min nTPM: 8.2
RHH5314_R3681
13.1
RHH5222_R3594
21.6
RHH5251_R3623
8.2
RHH5280_R3652
10.3
Non-classical monocyte nTPM: 15.2
Samples: 4
Max nTPM: 20.8
Min nTPM: 9.1
RHH5315_R3682
18.9
RHH5223_R3595
20.8
RHH5252_R3624
9.1
RHH5281_R3653
12.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
Schmiedel sample id
TPM
Classical monocyte TPM: 4.9
Samples: 91
Max TPM: 11.2
Min TPM: 1.5
MONOCYTES_1
11.2
MONOCYTES_2
9.7
MONOCYTES_3
9.6
MONOCYTES_4
9.4
MONOCYTES_5
8.2
MONOCYTES_6
8.1
MONOCYTES_7
8.0
MONOCYTES_8
7.9
MONOCYTES_9
7.5
MONOCYTES_10
7.0
MONOCYTES_11
6.9
MONOCYTES_12
6.8
MONOCYTES_13
6.5
MONOCYTES_14
6.5
MONOCYTES_15
6.5
MONOCYTES_16
6.3
MONOCYTES_17
6.3
MONOCYTES_18
6.2
MONOCYTES_19
6.2
MONOCYTES_20
6.1
MONOCYTES_21
6.0
MONOCYTES_22
5.9
MONOCYTES_23
5.9
MONOCYTES_24
5.9
MONOCYTES_25
5.8
MONOCYTES_26
5.7
MONOCYTES_27
5.4
MONOCYTES_28
5.4
MONOCYTES_29
5.4
MONOCYTES_30
5.3
MONOCYTES_31
5.1
MONOCYTES_32
5.1
MONOCYTES_33
5.1
MONOCYTES_34
5.0
MONOCYTES_35
5.0
MONOCYTES_36
5.0
MONOCYTES_37
5.0
MONOCYTES_38
5.0
MONOCYTES_39
4.9
MONOCYTES_40
4.9
MONOCYTES_41
4.9
MONOCYTES_42
4.8
MONOCYTES_43
4.8
MONOCYTES_44
4.8
MONOCYTES_45
4.7
MONOCYTES_46
4.6
MONOCYTES_47
4.5
MONOCYTES_48
4.5
MONOCYTES_49
4.5
MONOCYTES_50
4.4
MONOCYTES_51
4.4
MONOCYTES_52
4.3
MONOCYTES_53
4.2
MONOCYTES_54
4.2
MONOCYTES_55
4.1
MONOCYTES_56
4.1
MONOCYTES_57
4.0
MONOCYTES_58
4.0
MONOCYTES_59
4.0
MONOCYTES_60
4.0
MONOCYTES_61
4.0
MONOCYTES_62
3.9
MONOCYTES_63
3.9
MONOCYTES_64
3.8
MONOCYTES_65
3.8
MONOCYTES_66
3.7
MONOCYTES_67
3.7
MONOCYTES_68
3.7
MONOCYTES_69
3.7
MONOCYTES_70
3.6
MONOCYTES_71
3.6
MONOCYTES_72
3.6
MONOCYTES_73
3.5
MONOCYTES_74
3.5
MONOCYTES_75
3.5
MONOCYTES_76
3.4
MONOCYTES_77
3.4
MONOCYTES_78
3.4
MONOCYTES_79
3.3
MONOCYTES_80
3.2
MONOCYTES_81
3.2
MONOCYTES_82
3.2
MONOCYTES_83
3.1
MONOCYTES_84
3.1
MONOCYTES_85
3.1
MONOCYTES_86
3.0
MONOCYTES_87
2.8
MONOCYTES_88
2.8
MONOCYTES_89
2.7
MONOCYTES_90
2.5
MONOCYTES_91
1.5
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Non-classical monocyte TPM: 23.1
Samples: 90
Max TPM: 54.4
Min TPM: 11.2
M2_1
54.4
M2_2
43.2
M2_3
40.0
M2_4
38.7
M2_5
38.0
M2_6
35.5
M2_7
35.2
M2_8
35.0
M2_9
34.3
M2_10
34.2
M2_11
32.5
M2_12
30.8
M2_13
30.8
M2_14
30.4
M2_15
29.0
M2_16
28.5
M2_17
28.3
M2_18
27.6
M2_19
27.3
M2_20
27.1
M2_21
27.1
M2_22
26.4
M2_23
26.4
M2_24
26.1
M2_25
26.1
M2_26
25.3
M2_27
25.2
M2_28
25.1
M2_29
25.0
M2_30
24.7
M2_31
24.2
M2_32
24.1
M2_33
24.1
M2_34
23.9
M2_35
23.8
M2_36
23.7
M2_37
23.7
M2_38
23.7
M2_39
23.5
M2_40
23.4
M2_41
23.0
M2_42
22.9
M2_43
22.7
M2_44
22.5
M2_45
22.5
M2_46
22.4
M2_47
21.8
M2_48
21.5
M2_49
21.5
M2_50
20.7
M2_51
20.6
M2_52
20.4
M2_53
20.1
M2_54
19.9
M2_55
19.6
M2_56
19.4
M2_57
19.4
M2_58
19.3
M2_59
19.3
M2_60
19.0
M2_61
18.8
M2_62
18.6
M2_63
18.6
M2_64
18.4
M2_65
18.3
M2_66
18.1
M2_67
17.6
M2_68
17.2
M2_69
17.0
M2_70
16.9
M2_71
16.9
M2_72
16.8
M2_73
16.8
M2_74
16.7
M2_75
16.5
M2_76
16.3
M2_77
15.9
M2_78
15.8
M2_79
15.7
M2_80
15.3
M2_81
15.3
M2_82
15.2
M2_83
15.1
M2_84
14.9
M2_85
14.7
M2_86
14.5
M2_87
14.3
M2_88
14.2
M2_89
13.0
M2_90
11.2
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