BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1707.8 nTPM
HPA Brain:1408.7 nTPM
GTEx:1707.8 nTPM
FANTOM5:1607.2 Scaled Tags Per Million
Macaque:572.5 nTPM
Mouse:671.3 nTPM
Rat:226.8 nTPM
Pig:791.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1408.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1120.3
2828 Female, age 72, unknown 1314.2
1870 Female, age 42, unknown 1305.8
1830 Male, age 51, unknown 1243.8
1833 Male, age 53, unknown 1225.9
2411 Female, age 72, unknown 1149.5
2666 Male, age 74, left hemisphere 1137.4
2019 Male, age 18, unknown 1044.2
2586 Male, age 75, left hemisphere 1037.6
1827 Male, age 72, unknown 932.4
2219 Male, age 76, both hemispheres 812.4
Dorsal raphe nucleus
nTPM: 1041.0
2750 Male, age 76, both hemispheres 1405.3
2016 Female, age 72, unknown 1156.0
1828 Male, age 53, unknown 985.3
2047 Male, age 72, unknown 872.7
2298 Female, age 72, unknown 785.9
Inferior colliculus
nTPM: 849.7
2849 Male, age 72, unknown 928.4
1890 Male, age 53, unknown 889.1
1848 Female, age 42, unknown 855.4
2097 Female, age 72, unknown 726.0
Median raphe nucleus
nTPM: 1025.3
2220 Male, age 76, midline 1025.3
Periaquaductal grey, anterior
nTPM: 789.2
2502 Female, age 75, unknown 837.0
1795 Male, age 51, unknown 794.2
1947 Male, age 18, unknown 736.5
Periaquaductal grey, dorsal
nTPM: 860.0
2464 Female, age 72, unknown 956.4
2850 Male, age 76, both hemispheres 891.5
1831 Male, age 72, unknown 852.0
1840 Male, age 53, unknown 739.9
Periaquaductal grey, lateral
nTPM: 851.4
2053 Male, age 18, unknown 1007.0
2140 Male, age 76, both hemispheres 813.5
2272 Male, age 74, both hemispheres 733.7
Pretectal area
nTPM: 819.6
2316 Male, age 76, right hemisphere 1042.4
1815 Male, age 53, unknown 1029.9
2825 Male, age 18, unknown 969.9
1817 Female, age 42, unknown 824.1
2667 Female, age 75, unknown 801.0
2224 Female, age 72, unknown 781.4
2407 Male, age 75, both hemispheres 778.3
2273 Male, age 74, both hemispheres 763.9
1944 Female, age 72, unknown 714.6
2007 Male, age 72, unknown 691.9
1816 Male, age 51, unknown 618.7
Red nucleus
nTPM: 1408.7
2503 Female, age 72, unknown 1688.1
2769 Male, age 72, unknown 1587.4
2227 Male, age 72, unknown 1564.3
2823 Male, age 76, right hemisphere 1551.3
1904 Male, age 53, unknown 1539.5
1865 Male, age 51, unknown 1481.1
1821 Female, age 72, unknown 1458.8
2588 Male, age 74, left hemisphere 1411.9
1954 Female, age 42, unknown 1272.5
2785 Male, age 18, unknown 1218.1
2584 Male, age 75, left hemisphere 1077.9
2725 Female, age 75, unknown 1053.7
Substantia nigra
nTPM: 1017.7
2699 Male, age 18, unknown 1306.3
2665 Male, age 74, both hemispheres 1130.9
2590 Female, age 75, unknown 1125.6
1851 Male, age 51, unknown 1121.3
2583 Male, age 75, right hemisphere 989.4
1916 Female, age 42, unknown 950.8
2409 Female, age 72, unknown 944.9
1889 Female, age 72, unknown 922.6
1941 Male, age 53, unknown 843.2
2241 Male, age 72, unknown 842.0
Superior colliculus
nTPM: 998.7
1913 Female, age 42, unknown 1445.5
1995 Male, age 72, unknown 1353.4
2668 Female, age 75, unknown 1095.1
2587 Male, age 74, left hemisphere 1082.1
1839 Male, age 51, unknown 1012.2
1895 Male, age 76, right hemisphere 902.3
1796 Male, age 53, unknown 873.6
2664 Male, age 75, both hemispheres 814.4
2087 Female, age 72, unknown 726.6
2261 Male, age 18, unknown 681.6
Ventral tegmental area
nTPM: 1108.5
2223 Female, age 72, unknown 1373.1
2410 Female, age 72, unknown 1197.5
2021 Male, age 53, unknown 1072.0
1942 Male, age 51, unknown 1033.8
1915 Female, age 42, unknown 994.2
2218 Male, age 76, both hemispheres 980.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1707.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1707.8
Samples: 183

Max nTPM: 4324.3
Min nTPM: 104.4
Std nTPM: 735.4
Median nTPM: 1584.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 4324.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3955.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3780.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3283.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 3266.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3241.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3205.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 3108.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 3100.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 3042.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3025.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1607.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1607.2
FF:10158-103A5 76 years, female 1607.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 572.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 572.5
Samples: 1

Max nTPM: 572.5
Min nTPM: 572.5
Sample A 572.5
Midbrain
nTPM: 293.7
Samples: 1

Max nTPM: 293.7
Min nTPM: 293.7
Sample A 293.7
Superior colliculi
nTPM: 355.3
Samples: 1

Max nTPM: 355.3
Min nTPM: 355.3
Sample A 355.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 791.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 721.0
Samples: 3

Max nTPM: 825.1
Min nTPM: 574.2
Sample A Female 825.1
Sample B Female 574.2
Sample C Male 763.6
Midbrain
nTPM: 636.6
Samples: 3

Max nTPM: 970.5
Min nTPM: 467.7
Sample B Female 970.5
Sample C Male 471.7
Sample D Male 467.7
Periaqueductal gray
nTPM: 791.1
Samples: 3

Max nTPM: 823.2
Min nTPM: 771.1
Sample B Female 823.2
Sample C Male 779.1
Sample D Male 771.1
Superior colliculi
nTPM: 648.9
Samples: 4

Max nTPM: 779.0
Min nTPM: 415.7
Sample A Female 703.9
Sample B Female 415.7
Sample C Male 697.1
Sample D Male 779.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 671.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 671.3
Samples: 4

Max nTPM: 725.2
Min nTPM: 616.8
Sample A 725.2
Sample B 713.7
Sample C 629.4
Sample D 616.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 226.8
Rat sample Sample description nTPM
Midbrain
nTPM: 226.9
Samples: 4

Max nTPM: 273.0
Min nTPM: 207.3
Sample A 273.0
Sample A 215.2
Sample A 207.3
Sample A 211.9

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