A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
206.9
nTPM
Monaco:
450.6
nTPM
Schmiedel:
434.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
206.9
HPA sample
nTPM
Classical monocyte nTPM: 206.9
Samples: 6
Max nTPM: 366.8
Min nTPM: 156.0
P10809_1003
366.8
P10809_1020
184.0
P10809_1039
195.1
P10809_1058
159.4
P10809_1080
156.0
P10809_1107
179.8
Intermediate monocyte nTPM: 103.6
Samples: 6
Max nTPM: 129.2
Min nTPM: 92.0
P10809_1004
96.5
P10809_1023
109.7
P10809_1042
99.4
P10809_1061
94.6
P10809_1081
92.0
P10809_1108
129.2
Non-classical monocyte nTPM: 83.0
Samples: 5
Max nTPM: 109.9
Min nTPM: 55.4
P10809_1005
94.7
P10809_1053
72.1
P10809_1072
109.9
P10809_1082
55.4
P10809_1109
83.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
450.6
Monaco sample
nTPM
Classical monocyte nTPM: 450.7
Samples: 4
Max nTPM: 518.4
Min nTPM: 395.2
RHH5313_R3680
438.7
RHH5221_R3593
518.4
RHH5250_R3622
395.2
RHH5279_R3651
450.3
Intermediate monocyte nTPM: 235.6
Samples: 4
Max nTPM: 266.8
Min nTPM: 192.7
RHH5314_R3681
192.7
RHH5222_R3594
262.2
RHH5251_R3623
220.9
RHH5280_R3652
266.8
Non-classical monocyte nTPM: 164.8
Samples: 4
Max nTPM: 189.6
Min nTPM: 136.5
RHH5315_R3682
136.5
RHH5223_R3595
172.5
RHH5252_R3624
160.6
RHH5281_R3653
189.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
434.0
Schmiedel sample id
TPM
Classical monocyte TPM: 434.0
Samples: 91
Max TPM: 537.7
Min TPM: 263.5
MONOCYTES_1
537.7
MONOCYTES_2
534.0
MONOCYTES_3
530.1
MONOCYTES_4
529.0
MONOCYTES_5
524.2
MONOCYTES_6
519.0
MONOCYTES_7
517.2
MONOCYTES_8
513.0
MONOCYTES_9
507.9
MONOCYTES_10
505.5
MONOCYTES_11
505.0
MONOCYTES_12
504.8
MONOCYTES_13
504.3
MONOCYTES_14
500.9
MONOCYTES_15
499.2
MONOCYTES_16
497.3
MONOCYTES_17
496.1
MONOCYTES_18
492.0
MONOCYTES_19
487.7
MONOCYTES_20
487.3
MONOCYTES_21
486.5
MONOCYTES_22
478.6
MONOCYTES_23
474.0
MONOCYTES_24
473.5
MONOCYTES_25
471.6
MONOCYTES_26
470.7
MONOCYTES_27
468.1
MONOCYTES_28
467.6
MONOCYTES_29
467.0
MONOCYTES_30
464.2
MONOCYTES_31
461.6
MONOCYTES_32
459.3
MONOCYTES_33
458.4
MONOCYTES_34
457.3
MONOCYTES_35
450.4
MONOCYTES_36
449.6
MONOCYTES_37
448.1
MONOCYTES_38
445.3
MONOCYTES_39
442.3
MONOCYTES_40
441.0
MONOCYTES_41
440.2
MONOCYTES_42
439.5
MONOCYTES_43
439.3
MONOCYTES_44
437.4
MONOCYTES_45
434.7
MONOCYTES_46
429.4
MONOCYTES_47
427.6
MONOCYTES_48
424.6
MONOCYTES_49
424.3
MONOCYTES_50
422.7
MONOCYTES_51
422.0
MONOCYTES_52
419.1
MONOCYTES_53
417.5
MONOCYTES_54
415.2
MONOCYTES_55
413.2
MONOCYTES_56
412.7
MONOCYTES_57
410.4
MONOCYTES_58
410.3
MONOCYTES_59
410.1
MONOCYTES_60
408.3
MONOCYTES_61
403.5
MONOCYTES_62
402.5
MONOCYTES_63
402.2
MONOCYTES_64
402.1
MONOCYTES_65
400.8
MONOCYTES_66
400.0
MONOCYTES_67
399.9
MONOCYTES_68
397.2
MONOCYTES_69
396.3
MONOCYTES_70
394.1
MONOCYTES_71
390.7
MONOCYTES_72
386.8
MONOCYTES_73
382.2
MONOCYTES_74
382.1
MONOCYTES_75
379.5
MONOCYTES_76
379.1
MONOCYTES_77
377.8
MONOCYTES_78
377.3
MONOCYTES_79
375.9
MONOCYTES_80
371.1
MONOCYTES_81
367.5
MONOCYTES_82
367.1
MONOCYTES_83
365.6
MONOCYTES_84
364.4
MONOCYTES_85
363.3
MONOCYTES_86
363.0
MONOCYTES_87
356.0
MONOCYTES_88
346.9
MONOCYTES_89
344.9
MONOCYTES_90
304.9
MONOCYTES_91
263.5
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Non-classical monocyte TPM: 193.4
Samples: 90
Max TPM: 244.4
Min TPM: 122.3
M2_1
244.4
M2_2
243.0
M2_3
239.8
M2_4
234.3
M2_5
231.2
M2_6
227.0
M2_7
226.3
M2_8
222.9
M2_9
222.3
M2_10
221.4
M2_11
220.7
M2_12
220.4
M2_13
218.4
M2_14
217.3
M2_15
216.9
M2_16
216.8
M2_17
216.5
M2_18
216.0
M2_19
214.1
M2_20
213.3
M2_21
212.9
M2_22
212.8
M2_23
212.2
M2_24
212.1
M2_25
211.9
M2_26
211.8
M2_27
211.5
M2_28
209.1
M2_29
208.9
M2_30
207.1
M2_31
206.0
M2_32
204.3
M2_33
204.1
M2_34
204.0
M2_35
203.9
M2_36
201.0
M2_37
200.3
M2_38
199.5
M2_39
198.0
M2_40
197.7
M2_41
196.0
M2_42
194.7
M2_43
194.0
M2_44
193.8
M2_45
193.5
M2_46
192.9
M2_47
192.3
M2_48
191.5
M2_49
190.9
M2_50
190.9
M2_51
190.1
M2_52
189.7
M2_53
189.4
M2_54
189.1
M2_55
188.4
M2_56
188.1
M2_57
187.5
M2_58
187.5
M2_59
186.4
M2_60
185.1
M2_61
184.4
M2_62
182.1
M2_63
179.7
M2_64
178.7
M2_65
176.2
M2_66
174.8
M2_67
174.8
M2_68
174.2
M2_69
173.8
M2_70
173.7
M2_71
173.6
M2_72
172.4
M2_73
172.1
M2_74
170.5
M2_75
170.0
M2_76
169.6
M2_77
166.7
M2_78
166.2
M2_79
165.9
M2_80
162.2
M2_81
161.9
M2_82
161.8
M2_83
160.8
M2_84
160.4
M2_85
159.4
M2_86
157.1
M2_87
152.7
M2_88
152.6
M2_89
132.4
M2_90
122.3
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