FHL1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • FHL1
EVOLUTIONARY VAGINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Breast & female reproductive system
Evolutionary methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:250.4 nTPM
GTEx:250.4 nTPM
FANTOM5:159.6 Scaled Tags Per Million
Macaque:1066.7 nTPM
Mouse:33.3 nTPM
Rat:59.9 nTPM

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001040Antibody HPA001391Antibody CAB020817
Squamous epithelial cells Not detectedNot detectedNot detected






VAGINA - PROTEINTALKS DB MS
Median intensity 203212
Sample Intensity
Vagina_01
203212

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 250.4
Samples: 170

Max nTPM: 1023.5
Min nTPM: 9.7
Std nTPM: 217.7
Median nTPM: 181.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1023.5
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 979.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 956.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 854.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 783.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 778.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 771.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 747.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 738.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 684.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 684.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 673.3
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 661.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 657.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 632.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 631.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 614.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 571.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 533.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 525.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 508.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 492.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 486.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 478.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 463.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 458.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 455.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 454.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 451.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 448.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 444.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 423.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 421.5
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 408.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 396.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 387.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 387.1
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 377.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 377.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 375.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 373.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 340.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 335.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 329.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 329.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 323.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 314.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 312.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 311.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 310.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 304.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 296.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 290.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 279.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 277.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 268.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 264.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 260.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 258.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 254.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 254.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 252.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 246.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 243.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 241.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 234.3
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 234.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 233.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 233.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 233.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 228.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 227.3
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 225.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 225.4
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 222.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 219.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 216.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 210.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 210.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 206.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 203.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 201.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 201.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 190.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 185.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 178.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 177.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 174.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 173.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 171.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 169.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 164.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 163.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 163.4
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 162.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 161.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 157.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 155.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 152.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 151.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 149.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 147.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 146.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 140.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 140.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 139.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 134.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 132.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 129.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 129.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 118.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 114.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 111.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 111.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 110.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 110.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 109.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 109.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 105.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 105.0
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 104.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 99.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 97.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 96.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 96.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 94.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 93.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 90.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 82.7
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 82.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 76.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 76.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 75.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 75.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 74.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 71.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 70.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 69.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 65.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 65.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 62.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 60.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 58.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 56.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 55.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 53.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 52.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 51.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 50.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 48.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 47.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 43.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 42.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 41.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 38.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 36.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 35.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 35.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 29.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 28.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 27.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 21.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 21.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 20.3
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 20.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 17.7
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 17.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 17.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 15.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 9.7
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 159.6
FF:10204-103F6 68 years, female 159.6

VAGINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1066.7
Macaque sample Sample description nTPM
Vagina
nTPM: 1066.7
Samples: 1

Max nTPM: 1066.7
Min nTPM: 1066.7
Sample A 1066.7

VAGINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.3
Mouse sample Sample description nTPM
Vagina
nTPM: 33.4
Samples: 2

Max nTPM: 37.4
Min nTPM: 29.3
Sample A 29.3
Sample B 37.4

VAGINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.9
Rat sample Sample description nTPM
Vagina
nTPM: 59.9
Samples: 2

Max nTPM: 84.0
Min nTPM: 35.7
Sample A 35.7
Sample A 84.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.