A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.9
nTPM
Monaco:
63.6
nTPM
Schmiedel:
64.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
HPA sample
nTPM
Classical monocyte nTPM: 15.9
Samples: 6
Max nTPM: 19.2
Min nTPM: 13.5
P10809_1003
15.9
P10809_1020
19.2
P10809_1039
18.6
P10809_1058
13.6
P10809_1080
13.5
P10809_1107
14.5
Intermediate monocyte nTPM: 14.0
Samples: 6
Max nTPM: 16.3
Min nTPM: 9.4
P10809_1004
14.2
P10809_1023
14.5
P10809_1042
15.1
P10809_1061
14.5
P10809_1081
9.4
P10809_1108
16.3
Non-classical monocyte nTPM: 12.5
Samples: 5
Max nTPM: 22.4
Min nTPM: 8.1
P10809_1005
11.0
P10809_1053
10.8
P10809_1072
22.4
P10809_1082
8.1
P10809_1109
10.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.6
Monaco sample
nTPM
Classical monocyte nTPM: 63.7
Samples: 4
Max nTPM: 86.3
Min nTPM: 40.5
RHH5313_R3680
40.5
RHH5221_R3593
74.5
RHH5250_R3622
53.3
RHH5279_R3651
86.3
Intermediate monocyte nTPM: 43.5
Samples: 4
Max nTPM: 52.6
Min nTPM: 24.7
RHH5314_R3681
50.6
RHH5222_R3594
52.6
RHH5251_R3623
24.7
RHH5280_R3652
46.1
Non-classical monocyte nTPM: 43.8
Samples: 4
Max nTPM: 63.5
Min nTPM: 26.6
RHH5315_R3682
38.8
RHH5223_R3595
26.6
RHH5252_R3624
46.2
RHH5281_R3653
63.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.9
Schmiedel sample id
TPM
Classical monocyte TPM: 49.2
Samples: 91
Max TPM: 65.5
Min TPM: 34.7
MONOCYTES_1
65.5
MONOCYTES_2
65.4
MONOCYTES_3
64.7
MONOCYTES_4
62.7
MONOCYTES_5
60.7
MONOCYTES_6
59.7
MONOCYTES_7
59.5
MONOCYTES_8
59.3
MONOCYTES_9
59.3
MONOCYTES_10
59.1
MONOCYTES_11
58.6
MONOCYTES_12
58.1
MONOCYTES_13
58.1
MONOCYTES_14
57.5
MONOCYTES_15
57.3
MONOCYTES_16
57.3
MONOCYTES_17
56.4
MONOCYTES_18
56.3
MONOCYTES_19
56.1
MONOCYTES_20
55.5
MONOCYTES_21
55.3
MONOCYTES_22
54.6
MONOCYTES_23
53.4
MONOCYTES_24
53.4
MONOCYTES_25
53.2
MONOCYTES_26
53.2
MONOCYTES_27
53.2
MONOCYTES_28
53.0
MONOCYTES_29
52.7
MONOCYTES_30
52.5
MONOCYTES_31
52.3
MONOCYTES_32
52.2
MONOCYTES_33
51.8
MONOCYTES_34
51.2
MONOCYTES_35
50.8
MONOCYTES_36
50.5
MONOCYTES_37
50.4
MONOCYTES_38
50.3
MONOCYTES_39
49.7
MONOCYTES_40
49.6
MONOCYTES_41
49.5
MONOCYTES_42
49.3
MONOCYTES_43
49.1
MONOCYTES_44
49.0
MONOCYTES_45
49.0
MONOCYTES_46
48.8
MONOCYTES_47
48.0
MONOCYTES_48
48.0
MONOCYTES_49
47.9
MONOCYTES_50
47.8
MONOCYTES_51
47.5
MONOCYTES_52
47.3
MONOCYTES_53
46.9
MONOCYTES_54
46.6
MONOCYTES_55
46.3
MONOCYTES_56
46.0
MONOCYTES_57
45.7
MONOCYTES_58
45.4
MONOCYTES_59
45.2
MONOCYTES_60
44.8
MONOCYTES_61
44.7
MONOCYTES_62
44.6
MONOCYTES_63
44.4
MONOCYTES_64
44.3
MONOCYTES_65
44.3
MONOCYTES_66
44.0
MONOCYTES_67
43.9
MONOCYTES_68
43.8
MONOCYTES_69
43.6
MONOCYTES_70
43.4
MONOCYTES_71
43.3
MONOCYTES_72
43.2
MONOCYTES_73
43.1
MONOCYTES_74
42.7
MONOCYTES_75
42.6
MONOCYTES_76
41.7
MONOCYTES_77
41.7
MONOCYTES_78
41.7
MONOCYTES_79
41.6
MONOCYTES_80
41.3
MONOCYTES_81
41.1
MONOCYTES_82
41.1
MONOCYTES_83
40.7
MONOCYTES_84
40.7
MONOCYTES_85
40.6
MONOCYTES_86
39.8
MONOCYTES_87
39.8
MONOCYTES_88
39.4
MONOCYTES_89
38.7
MONOCYTES_90
38.1
MONOCYTES_91
34.7
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Non-classical monocyte TPM: 64.9
Samples: 90
Max TPM: 97.2
Min TPM: 43.7
M2_1
97.2
M2_2
96.5
M2_3
86.4
M2_4
84.0
M2_5
83.8
M2_6
83.7
M2_7
82.2
M2_8
81.6
M2_9
81.0
M2_10
79.0
M2_11
78.0
M2_12
75.8
M2_13
75.4
M2_14
75.2
M2_15
75.0
M2_16
72.9
M2_17
72.6
M2_18
72.3
M2_19
72.2
M2_20
70.5
M2_21
70.4
M2_22
70.3
M2_23
69.9
M2_24
69.5
M2_25
69.0
M2_26
68.5
M2_27
68.4
M2_28
68.4
M2_29
68.2
M2_30
68.0
M2_31
67.2
M2_32
67.2
M2_33
67.1
M2_34
66.7
M2_35
66.3
M2_36
65.6
M2_37
65.5
M2_38
65.4
M2_39
64.8
M2_40
64.6
M2_41
64.5
M2_42
64.3
M2_43
64.1
M2_44
64.0
M2_45
63.9
M2_46
63.9
M2_47
63.8
M2_48
63.5
M2_49
63.2
M2_50
62.9
M2_51
62.5
M2_52
62.5
M2_53
62.0
M2_54
61.8
M2_55
61.2
M2_56
61.1
M2_57
61.1
M2_58
60.2
M2_59
60.1
M2_60
59.3
M2_61
59.2
M2_62
58.9
M2_63
58.7
M2_64
58.5
M2_65
58.5
M2_66
58.2
M2_67
57.8
M2_68
57.8
M2_69
57.6
M2_70
56.6
M2_71
56.6
M2_72
56.5
M2_73
56.2
M2_74
55.7
M2_75
55.4
M2_76
55.1
M2_77
54.2
M2_78
54.0
M2_79
53.8
M2_80
53.5
M2_81
53.3
M2_82
53.2
M2_83
52.9
M2_84
52.7
M2_85
52.3
M2_86
51.5
M2_87
50.8
M2_88
50.8
M2_89
50.7
M2_90
43.7
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