MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA Brain:79.2 nTPM
GTEx:14.0 nTPM
FANTOM5:15.6 Scaled Tags Per Million
Pig:43.0 nTPM
Mouse:39.3 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.0
2019 Male, age 18, unknown 104.1
2219 Male, age 76, both hemispheres 92.6
2586 Male, age 75, left hemisphere 77.3
1827 Male, age 72, unknown 65.6
2828 Female, age 72, unknown 60.4
2411 Female, age 72, unknown 49.2
2666 Male, age 74, left hemisphere 48.6
1830 Male, age 51, unknown 45.6
1833 Male, age 53, unknown 45.3
1870 Female, age 42, unknown 41.5
Dorsal raphe nucleus
nTPM: 52.3
1828 Male, age 53, unknown 65.2
2047 Male, age 72, unknown 59.9
2298 Female, age 72, unknown 51.6
2750 Male, age 76, both hemispheres 44.7
2016 Female, age 72, unknown 40.3
Inferior colliculus
nTPM: 63.2
2097 Female, age 72, unknown 70.9
1890 Male, age 53, unknown 66.6
1848 Female, age 42, unknown 62.9
2849 Male, age 72, unknown 52.4
Median raphe nucleus
nTPM: 52.2
2220 Male, age 76, midline 52.2
Periaquaductal grey, anterior
nTPM: 59.3
1795 Male, age 51, unknown 63.7
2502 Female, age 75, unknown 58.2
1947 Male, age 18, unknown 56.1
Periaquaductal grey, dorsal
nTPM: 47.2
2464 Female, age 72, unknown 55.0
1831 Male, age 72, unknown 49.9
1840 Male, age 53, unknown 44.7
2850 Male, age 76, both hemispheres 39.1
Periaquaductal grey, lateral
nTPM: 49.3
2140 Male, age 76, both hemispheres 51.8
2272 Male, age 74, both hemispheres 48.9
2053 Male, age 18, unknown 47.2
Pretectal area
nTPM: 79.2
2007 Male, age 72, unknown 122.3
1817 Female, age 42, unknown 115.3
1816 Male, age 51, unknown 109.4
1944 Female, age 72, unknown 98.3
1815 Male, age 53, unknown 85.9
2667 Female, age 75, unknown 77.5
2407 Male, age 75, both hemispheres 58.5
2224 Female, age 72, unknown 54.1
2273 Male, age 74, both hemispheres 53.9
2316 Male, age 76, right hemisphere 51.7
2825 Male, age 18, unknown 44.1
Red nucleus
nTPM: 63.4
2785 Male, age 18, unknown 85.6
1821 Female, age 72, unknown 70.4
1954 Female, age 42, unknown 67.3
2823 Male, age 76, right hemisphere 66.9
1865 Male, age 51, unknown 63.8
2503 Female, age 72, unknown 61.7
2588 Male, age 74, left hemisphere 61.5
2725 Female, age 75, unknown 58.2
2769 Male, age 72, unknown 57.1
2584 Male, age 75, left hemisphere 56.8
1904 Male, age 53, unknown 56.2
2227 Male, age 72, unknown 55.6
Substantia nigra
nTPM: 62.8
1889 Female, age 72, unknown 90.5
1941 Male, age 53, unknown 83.4
1916 Female, age 42, unknown 75.6
2665 Male, age 74, both hemispheres 68.7
2590 Female, age 75, unknown 56.2
2583 Male, age 75, right hemisphere 56.1
1851 Male, age 51, unknown 55.6
2241 Male, age 72, unknown 51.6
2409 Female, age 72, unknown 49.6
2699 Male, age 18, unknown 40.2
Superior colliculus
nTPM: 61.5
2087 Female, age 72, unknown 89.0
2261 Male, age 18, unknown 71.8
2664 Male, age 75, both hemispheres 69.3
2668 Female, age 75, unknown 69.0
1895 Male, age 76, right hemisphere 63.4
1796 Male, age 53, unknown 60.7
1839 Male, age 51, unknown 54.2
1995 Male, age 72, unknown 47.7
1913 Female, age 42, unknown 45.5
2587 Male, age 74, left hemisphere 44.3
Ventral tegmental area
nTPM: 52.0
2410 Female, age 72, unknown 65.4
2218 Male, age 76, both hemispheres 63.0
1915 Female, age 42, unknown 51.1
1942 Male, age 51, unknown 51.0
2223 Female, age 72, unknown 44.3
2021 Male, age 53, unknown 37.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.0
Samples: 183

Max nTPM: 50.9
Min nTPM: 2.4
Std nTPM: 6.9
Median nTPM: 13.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 34.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 29.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 28.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 28.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 27.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 26.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 24.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.6
FF:10158-103A5 76 years, female 15.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 43.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.4
Samples: 4

Max nTPM: 29.1
Min nTPM: 21.8
Sample A Female 29.1
Sample B Female 23.3
Sample C Male 27.3
Sample D Male 21.8
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 63.2
Min nTPM: 18.6
Sample A Female 18.6
Sample B Female 23.1
Sample C Male 63.2
Sample D Male 44.0
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 23.3
Min nTPM: 21.5
Sample B Female 23.3
Sample C Male 23.3
Sample D Male 21.5
Superior colliculi
nTPM: 43.0
Samples: 4

Max nTPM: 71.2
Min nTPM: 21.9
Sample A Female 36.9
Sample B Female 21.9
Sample C Male 71.2
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.3
Samples: 4

Max nTPM: 42.7
Min nTPM: 35.4
Sample A Male 35.4
Sample B Male 40.6
Sample C Female 42.7
Sample D Female 38.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71161171 Antisense, RP_050810_02_G11, Mouse strain C57BL/6J (56 days, male) 0.5
71495161 Antisense, RP_050913_03_C02, Mouse strain C57BL/6J (56 days, male) 0.1

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