A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.6
nTPM
Monaco:
55.7
nTPM
Schmiedel:
24.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.6
HPA sample
nTPM
Classical monocyte nTPM: 12.9
Samples: 6
Max nTPM: 15.4
Min nTPM: 10.3
P10809_1003
15.4
P10809_1020
15.1
P10809_1039
12.7
P10809_1058
12.3
P10809_1080
11.5
P10809_1107
10.3
Intermediate monocyte nTPM: 15.2
Samples: 6
Max nTPM: 20.3
Min nTPM: 11.5
P10809_1004
15.0
P10809_1023
18.0
P10809_1042
20.3
P10809_1061
11.5
P10809_1081
12.1
P10809_1108
14.3
Non-classical monocyte nTPM: 22.6
Samples: 5
Max nTPM: 48.8
Min nTPM: 12.4
P10809_1005
19.9
P10809_1053
19.4
P10809_1072
48.8
P10809_1082
12.6
P10809_1109
12.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.7
Monaco sample
nTPM
Classical monocyte nTPM: 41.3
Samples: 4
Max nTPM: 52.0
Min nTPM: 34.8
RHH5313_R3680
37.6
RHH5221_R3593
40.9
RHH5250_R3622
52.0
RHH5279_R3651
34.8
Intermediate monocyte nTPM: 44.8
Samples: 4
Max nTPM: 56.5
Min nTPM: 35.3
RHH5314_R3681
44.7
RHH5222_R3594
56.5
RHH5251_R3623
35.3
RHH5280_R3652
42.8
Non-classical monocyte nTPM: 55.7
Samples: 4
Max nTPM: 63.4
Min nTPM: 49.6
RHH5315_R3682
55.4
RHH5223_R3595
63.4
RHH5252_R3624
54.5
RHH5281_R3653
49.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.9
Schmiedel sample id
TPM
Classical monocyte TPM: 15.7
Samples: 91
Max TPM: 20.9
Min TPM: 11.0
MONOCYTES_1
20.9
MONOCYTES_2
19.6
MONOCYTES_3
19.6
MONOCYTES_4
19.4
MONOCYTES_5
19.4
MONOCYTES_6
19.2
MONOCYTES_7
19.1
MONOCYTES_8
19.0
MONOCYTES_9
18.9
MONOCYTES_10
18.8
MONOCYTES_11
18.8
MONOCYTES_12
18.7
MONOCYTES_13
18.7
MONOCYTES_14
18.6
MONOCYTES_15
18.1
MONOCYTES_16
18.1
MONOCYTES_17
18.0
MONOCYTES_18
17.8
MONOCYTES_19
17.7
MONOCYTES_20
17.6
MONOCYTES_21
17.5
MONOCYTES_22
17.4
MONOCYTES_23
17.3
MONOCYTES_24
17.3
MONOCYTES_25
17.3
MONOCYTES_26
17.2
MONOCYTES_27
17.1
MONOCYTES_28
17.0
MONOCYTES_29
17.0
MONOCYTES_30
17.0
MONOCYTES_31
16.9
MONOCYTES_32
16.9
MONOCYTES_33
16.9
MONOCYTES_34
16.9
MONOCYTES_35
16.6
MONOCYTES_36
16.4
MONOCYTES_37
16.4
MONOCYTES_38
16.3
MONOCYTES_39
16.3
MONOCYTES_40
16.3
MONOCYTES_41
16.3
MONOCYTES_42
16.2
MONOCYTES_43
16.2
MONOCYTES_44
16.1
MONOCYTES_45
16.1
MONOCYTES_46
16.1
MONOCYTES_47
16.0
MONOCYTES_48
15.8
MONOCYTES_49
15.7
MONOCYTES_50
15.6
MONOCYTES_51
15.6
MONOCYTES_52
15.6
MONOCYTES_53
15.6
MONOCYTES_54
15.4
MONOCYTES_55
15.3
MONOCYTES_56
15.3
MONOCYTES_57
15.0
MONOCYTES_58
14.8
MONOCYTES_59
14.7
MONOCYTES_60
14.6
MONOCYTES_61
14.5
MONOCYTES_62
14.4
MONOCYTES_63
14.4
MONOCYTES_64
14.1
MONOCYTES_65
14.1
MONOCYTES_66
14.0
MONOCYTES_67
13.9
MONOCYTES_68
13.9
MONOCYTES_69
13.7
MONOCYTES_70
13.7
MONOCYTES_71
13.7
MONOCYTES_72
13.7
MONOCYTES_73
13.4
MONOCYTES_74
13.4
MONOCYTES_75
13.3
MONOCYTES_76
13.3
MONOCYTES_77
13.2
MONOCYTES_78
13.2
MONOCYTES_79
13.2
MONOCYTES_80
12.8
MONOCYTES_81
12.6
MONOCYTES_82
12.5
MONOCYTES_83
12.2
MONOCYTES_84
12.1
MONOCYTES_85
12.1
MONOCYTES_86
12.1
MONOCYTES_87
11.9
MONOCYTES_88
11.7
MONOCYTES_89
11.1
MONOCYTES_90
11.1
MONOCYTES_91
11.0
Show allShow less
Non-classical monocyte TPM: 24.9
Samples: 90
Max TPM: 33.9
Min TPM: 16.1
M2_1
33.9
M2_2
33.8
M2_3
32.2
M2_4
32.0
M2_5
31.0
M2_6
30.6
M2_7
30.3
M2_8
30.2
M2_9
29.7
M2_10
29.6
M2_11
29.4
M2_12
29.2
M2_13
29.0
M2_14
28.9
M2_15
28.7
M2_16
28.6
M2_17
28.4
M2_18
28.2
M2_19
27.6
M2_20
27.5
M2_21
27.4
M2_22
27.3
M2_23
26.9
M2_24
26.8
M2_25
26.7
M2_26
26.6
M2_27
26.6
M2_28
26.6
M2_29
26.4
M2_30
26.4
M2_31
26.2
M2_32
26.1
M2_33
26.1
M2_34
26.1
M2_35
25.9
M2_36
25.8
M2_37
25.8
M2_38
25.6
M2_39
25.6
M2_40
25.6
M2_41
25.4
M2_42
25.3
M2_43
25.1
M2_44
25.1
M2_45
25.0
M2_46
24.9
M2_47
24.7
M2_48
24.1
M2_49
23.9
M2_50
23.8
M2_51
23.8
M2_52
23.7
M2_53
23.6
M2_54
23.5
M2_55
23.5
M2_56
23.5
M2_57
23.3
M2_58
23.3
M2_59
23.2
M2_60
23.2
M2_61
23.1
M2_62
23.0
M2_63
22.8
M2_64
22.5
M2_65
22.5
M2_66
22.4
M2_67
21.8
M2_68
21.8
M2_69
21.8
M2_70
21.7
M2_71
21.6
M2_72
21.6
M2_73
21.5
M2_74
21.4
M2_75
21.4
M2_76
21.4
M2_77
21.3
M2_78
21.2
M2_79
21.1
M2_80
21.0
M2_81
20.6
M2_82
20.4
M2_83
20.4
M2_84
20.3
M2_85
20.1
M2_86
19.7
M2_87
19.2
M2_88
18.8
M2_89
17.7
M2_90
16.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
