A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.2
nTPM
Monaco:
41.6
nTPM
Schmiedel:
46.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
HPA sample
nTPM
Classical monocyte nTPM: 13.0
Samples: 6
Max nTPM: 18.0
Min nTPM: 9.4
P10809_1003
11.6
P10809_1020
9.4
P10809_1039
18.0
P10809_1058
13.0
P10809_1080
15.6
P10809_1107
10.2
Intermediate monocyte nTPM: 12.2
Samples: 6
Max nTPM: 20.2
Min nTPM: 7.8
P10809_1004
10.4
P10809_1023
7.8
P10809_1042
12.3
P10809_1061
20.2
P10809_1081
13.5
P10809_1108
9.1
Non-classical monocyte nTPM: 17.2
Samples: 5
Max nTPM: 43.0
Min nTPM: 7.3
P10809_1005
8.5
P10809_1053
12.1
P10809_1072
43.0
P10809_1082
15.3
P10809_1109
7.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.6
Monaco sample
nTPM
Classical monocyte nTPM: 41.6
Samples: 4
Max nTPM: 47.8
Min nTPM: 31.3
RHH5313_R3680
31.3
RHH5221_R3593
42.6
RHH5250_R3622
44.5
RHH5279_R3651
47.8
Intermediate monocyte nTPM: 30.6
Samples: 4
Max nTPM: 34.4
Min nTPM: 24.7
RHH5314_R3681
29.2
RHH5222_R3594
24.7
RHH5251_R3623
34.4
RHH5280_R3652
34.2
Non-classical monocyte nTPM: 41.0
Samples: 4
Max nTPM: 45.5
Min nTPM: 31.4
RHH5315_R3682
31.4
RHH5223_R3595
43.7
RHH5252_R3624
43.4
RHH5281_R3653
45.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.6
Schmiedel sample id
TPM
Classical monocyte TPM: 42.8
Samples: 91
Max TPM: 56.8
Min TPM: 27.6
MONOCYTES_1
56.8
MONOCYTES_2
54.9
MONOCYTES_3
53.9
MONOCYTES_4
52.7
MONOCYTES_5
52.0
MONOCYTES_6
51.7
MONOCYTES_7
51.3
MONOCYTES_8
50.6
MONOCYTES_9
50.6
MONOCYTES_10
50.4
MONOCYTES_11
50.3
MONOCYTES_12
50.2
MONOCYTES_13
50.0
MONOCYTES_14
49.9
MONOCYTES_15
49.9
MONOCYTES_16
49.4
MONOCYTES_17
48.7
MONOCYTES_18
48.4
MONOCYTES_19
48.4
MONOCYTES_20
48.2
MONOCYTES_21
48.1
MONOCYTES_22
48.0
MONOCYTES_23
47.6
MONOCYTES_24
46.9
MONOCYTES_25
46.8
MONOCYTES_26
46.2
MONOCYTES_27
45.9
MONOCYTES_28
45.5
MONOCYTES_29
45.3
MONOCYTES_30
45.2
MONOCYTES_31
45.0
MONOCYTES_32
44.8
MONOCYTES_33
44.7
MONOCYTES_34
44.7
MONOCYTES_35
44.4
MONOCYTES_36
44.2
MONOCYTES_37
44.2
MONOCYTES_38
44.1
MONOCYTES_39
43.9
MONOCYTES_40
43.8
MONOCYTES_41
43.3
MONOCYTES_42
43.3
MONOCYTES_43
43.2
MONOCYTES_44
43.2
MONOCYTES_45
43.2
MONOCYTES_46
43.0
MONOCYTES_47
43.0
MONOCYTES_48
43.0
MONOCYTES_49
42.9
MONOCYTES_50
42.7
MONOCYTES_51
42.5
MONOCYTES_52
41.8
MONOCYTES_53
41.6
MONOCYTES_54
41.2
MONOCYTES_55
41.2
MONOCYTES_56
41.1
MONOCYTES_57
40.1
MONOCYTES_58
40.1
MONOCYTES_59
39.8
MONOCYTES_60
39.8
MONOCYTES_61
39.6
MONOCYTES_62
39.3
MONOCYTES_63
39.3
MONOCYTES_64
39.1
MONOCYTES_65
39.0
MONOCYTES_66
39.0
MONOCYTES_67
39.0
MONOCYTES_68
38.9
MONOCYTES_69
38.7
MONOCYTES_70
38.6
MONOCYTES_71
38.3
MONOCYTES_72
38.1
MONOCYTES_73
38.0
MONOCYTES_74
37.4
MONOCYTES_75
36.9
MONOCYTES_76
36.7
MONOCYTES_77
36.7
MONOCYTES_78
36.4
MONOCYTES_79
36.4
MONOCYTES_80
36.1
MONOCYTES_81
36.1
MONOCYTES_82
35.8
MONOCYTES_83
35.6
MONOCYTES_84
35.4
MONOCYTES_85
33.7
MONOCYTES_86
33.6
MONOCYTES_87
33.4
MONOCYTES_88
33.4
MONOCYTES_89
31.9
MONOCYTES_90
31.4
MONOCYTES_91
27.6
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Non-classical monocyte TPM: 46.6
Samples: 90
Max TPM: 67.9
Min TPM: 26.5
M2_1
67.9
M2_2
67.1
M2_3
65.0
M2_4
64.7
M2_5
63.1
M2_6
61.9
M2_7
60.4
M2_8
59.6
M2_9
59.3
M2_10
59.1
M2_11
58.6
M2_12
58.1
M2_13
58.1
M2_14
57.6
M2_15
57.2
M2_16
57.0
M2_17
56.8
M2_18
56.2
M2_19
55.4
M2_20
55.3
M2_21
55.0
M2_22
53.7
M2_23
52.2
M2_24
51.8
M2_25
50.9
M2_26
49.6
M2_27
49.5
M2_28
49.0
M2_29
48.7
M2_30
48.2
M2_31
48.0
M2_32
47.8
M2_33
47.7
M2_34
47.7
M2_35
47.7
M2_36
47.7
M2_37
47.4
M2_38
47.2
M2_39
47.0
M2_40
46.8
M2_41
46.8
M2_42
46.6
M2_43
46.1
M2_44
46.0
M2_45
45.9
M2_46
45.8
M2_47
45.5
M2_48
45.4
M2_49
45.0
M2_50
44.8
M2_51
44.7
M2_52
44.6
M2_53
44.2
M2_54
43.8
M2_55
43.4
M2_56
43.3
M2_57
43.2
M2_58
43.1
M2_59
42.9
M2_60
42.5
M2_61
42.4
M2_62
42.0
M2_63
41.6
M2_64
41.2
M2_65
40.9
M2_66
40.7
M2_67
40.7
M2_68
40.7
M2_69
40.4
M2_70
40.3
M2_71
40.0
M2_72
39.4
M2_73
38.8
M2_74
38.4
M2_75
37.9
M2_76
37.7
M2_77
37.3
M2_78
37.1
M2_79
37.0
M2_80
36.4
M2_81
35.9
M2_82
35.3
M2_83
35.2
M2_84
34.9
M2_85
34.4
M2_86
33.3
M2_87
32.9
M2_88
31.0
M2_89
30.7
M2_90
26.5
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