A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.9
nTPM
Monaco:
89.9
nTPM
Schmiedel:
48.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.9
HPA sample
nTPM
Classical monocyte nTPM: 33.4
Samples: 6
Max nTPM: 46.4
Min nTPM: 22.5
P10809_1003
46.4
P10809_1020
35.8
P10809_1039
26.6
P10809_1058
22.5
P10809_1080
34.0
P10809_1107
35.4
Intermediate monocyte nTPM: 43.0
Samples: 6
Max nTPM: 57.8
Min nTPM: 31.4
P10809_1004
57.0
P10809_1023
34.9
P10809_1042
40.4
P10809_1061
57.8
P10809_1081
31.4
P10809_1108
36.2
Non-classical monocyte nTPM: 39.2
Samples: 5
Max nTPM: 50.9
Min nTPM: 24.5
P10809_1005
50.9
P10809_1053
40.7
P10809_1072
42.3
P10809_1082
24.5
P10809_1109
37.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.9
Monaco sample
nTPM
Classical monocyte nTPM: 78.2
Samples: 4
Max nTPM: 90.5
Min nTPM: 59.4
RHH5313_R3680
72.9
RHH5221_R3593
90.5
RHH5250_R3622
90.0
RHH5279_R3651
59.4
Intermediate monocyte nTPM: 87.1
Samples: 4
Max nTPM: 101.0
Min nTPM: 68.7
RHH5314_R3681
93.0
RHH5222_R3594
101.0
RHH5251_R3623
85.8
RHH5280_R3652
68.7
Non-classical monocyte nTPM: 89.9
Samples: 4
Max nTPM: 102.3
Min nTPM: 74.9
RHH5315_R3682
91.3
RHH5223_R3595
102.3
RHH5252_R3624
74.9
RHH5281_R3653
91.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.4
Schmiedel sample id
TPM
Classical monocyte TPM: 44.2
Samples: 91
Max TPM: 107.0
Min TPM: 23.0
MONOCYTES_1
107.0
MONOCYTES_2
74.0
MONOCYTES_3
69.3
MONOCYTES_4
64.5
MONOCYTES_5
62.3
MONOCYTES_6
62.1
MONOCYTES_7
60.1
MONOCYTES_8
57.8
MONOCYTES_9
56.6
MONOCYTES_10
56.4
MONOCYTES_11
54.5
MONOCYTES_12
54.4
MONOCYTES_13
53.5
MONOCYTES_14
52.9
MONOCYTES_15
51.9
MONOCYTES_16
51.5
MONOCYTES_17
51.4
MONOCYTES_18
51.1
MONOCYTES_19
50.9
MONOCYTES_20
50.7
MONOCYTES_21
50.4
MONOCYTES_22
49.1
MONOCYTES_23
48.7
MONOCYTES_24
48.6
MONOCYTES_25
48.0
MONOCYTES_26
48.0
MONOCYTES_27
47.8
MONOCYTES_28
47.4
MONOCYTES_29
47.3
MONOCYTES_30
47.2
MONOCYTES_31
47.1
MONOCYTES_32
46.7
MONOCYTES_33
46.5
MONOCYTES_34
46.3
MONOCYTES_35
46.0
MONOCYTES_36
45.5
MONOCYTES_37
45.0
MONOCYTES_38
44.6
MONOCYTES_39
44.6
MONOCYTES_40
44.2
MONOCYTES_41
43.9
MONOCYTES_42
43.8
MONOCYTES_43
43.7
MONOCYTES_44
43.4
MONOCYTES_45
43.3
MONOCYTES_46
43.2
MONOCYTES_47
43.0
MONOCYTES_48
43.0
MONOCYTES_49
42.6
MONOCYTES_50
41.4
MONOCYTES_51
41.1
MONOCYTES_52
40.9
MONOCYTES_53
40.8
MONOCYTES_54
40.6
MONOCYTES_55
40.5
MONOCYTES_56
39.6
MONOCYTES_57
39.4
MONOCYTES_58
39.2
MONOCYTES_59
39.0
MONOCYTES_60
39.0
MONOCYTES_61
39.0
MONOCYTES_62
38.6
MONOCYTES_63
38.5
MONOCYTES_64
38.5
MONOCYTES_65
38.5
MONOCYTES_66
38.5
MONOCYTES_67
38.4
MONOCYTES_68
38.2
MONOCYTES_69
38.1
MONOCYTES_70
37.5
MONOCYTES_71
37.0
MONOCYTES_72
36.9
MONOCYTES_73
36.9
MONOCYTES_74
36.3
MONOCYTES_75
36.2
MONOCYTES_76
36.1
MONOCYTES_77
36.0
MONOCYTES_78
34.7
MONOCYTES_79
34.2
MONOCYTES_80
33.5
MONOCYTES_81
32.7
MONOCYTES_82
32.1
MONOCYTES_83
31.7
MONOCYTES_84
31.1
MONOCYTES_85
30.6
MONOCYTES_86
30.3
MONOCYTES_87
29.3
MONOCYTES_88
26.7
MONOCYTES_89
26.7
MONOCYTES_90
26.6
MONOCYTES_91
23.0
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Non-classical monocyte TPM: 48.4
Samples: 90
Max TPM: 70.7
Min TPM: 31.0
M2_1
70.7
M2_2
64.7
M2_3
63.2
M2_4
61.4
M2_5
60.3
M2_6
59.7
M2_7
59.5
M2_8
59.4
M2_9
58.9
M2_10
58.9
M2_11
58.5
M2_12
58.0
M2_13
57.2
M2_14
56.6
M2_15
56.1
M2_16
56.0
M2_17
55.8
M2_18
55.2
M2_19
55.2
M2_20
54.8
M2_21
54.3
M2_22
54.1
M2_23
53.8
M2_24
53.8
M2_25
53.8
M2_26
53.7
M2_27
53.4
M2_28
52.7
M2_29
52.4
M2_30
52.2
M2_31
52.1
M2_32
52.1
M2_33
51.5
M2_34
51.4
M2_35
51.1
M2_36
51.1
M2_37
50.9
M2_38
50.7
M2_39
50.7
M2_40
50.4
M2_41
49.9
M2_42
49.9
M2_43
49.8
M2_44
49.5
M2_45
49.2
M2_46
48.5
M2_47
47.8
M2_48
47.7
M2_49
47.4
M2_50
47.1
M2_51
46.9
M2_52
46.8
M2_53
46.7
M2_54
46.6
M2_55
46.2
M2_56
46.2
M2_57
46.2
M2_58
45.9
M2_59
45.7
M2_60
45.6
M2_61
44.7
M2_62
44.4
M2_63
44.2
M2_64
44.0
M2_65
43.1
M2_66
42.9
M2_67
42.5
M2_68
42.4
M2_69
42.4
M2_70
41.6
M2_71
41.6
M2_72
41.1
M2_73
40.7
M2_74
40.1
M2_75
39.9
M2_76
39.6
M2_77
39.5
M2_78
39.5
M2_79
38.6
M2_80
38.2
M2_81
37.8
M2_82
37.2
M2_83
36.0
M2_84
35.7
M2_85
34.9
M2_86
34.5
M2_87
33.9
M2_88
33.1
M2_89
33.0
M2_90
31.0
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