A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
76.8
nTPM
Monaco:
99.8
nTPM
Schmiedel:
47.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.8
HPA sample
nTPM
Classical monocyte nTPM: 58.5
Samples: 6
Max nTPM: 77.3
Min nTPM: 38.1
P10809_1003
38.1
P10809_1020
71.9
P10809_1039
77.3
P10809_1058
51.7
P10809_1080
66.5
P10809_1107
45.3
Intermediate monocyte nTPM: 68.5
Samples: 6
Max nTPM: 96.7
Min nTPM: 39.6
P10809_1004
70.2
P10809_1023
79.9
P10809_1042
96.7
P10809_1061
39.6
P10809_1081
65.4
P10809_1108
58.9
Non-classical monocyte nTPM: 76.8
Samples: 5
Max nTPM: 124.8
Min nTPM: 53.9
P10809_1005
54.9
P10809_1053
81.6
P10809_1072
124.8
P10809_1082
53.9
P10809_1109
68.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.8
Monaco sample
nTPM
Classical monocyte nTPM: 99.8
Samples: 4
Max nTPM: 109.7
Min nTPM: 86.7
RHH5313_R3680
100.4
RHH5221_R3593
109.7
RHH5250_R3622
102.5
RHH5279_R3651
86.7
Intermediate monocyte nTPM: 78.4
Samples: 4
Max nTPM: 99.0
Min nTPM: 48.6
RHH5314_R3681
99.0
RHH5222_R3594
48.6
RHH5251_R3623
76.9
RHH5280_R3652
89.1
Non-classical monocyte nTPM: 76.7
Samples: 4
Max nTPM: 100.2
Min nTPM: 51.2
RHH5315_R3682
78.3
RHH5223_R3595
51.2
RHH5252_R3624
77.1
RHH5281_R3653
100.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.4
Schmiedel sample id
TPM
Classical monocyte TPM: 38.3
Samples: 91
Max TPM: 47.9
Min TPM: 28.7
MONOCYTES_1
47.9
MONOCYTES_2
45.7
MONOCYTES_3
45.1
MONOCYTES_4
44.7
MONOCYTES_5
44.6
MONOCYTES_6
44.2
MONOCYTES_7
44.1
MONOCYTES_8
44.0
MONOCYTES_9
44.0
MONOCYTES_10
43.7
MONOCYTES_11
42.8
MONOCYTES_12
42.5
MONOCYTES_13
41.8
MONOCYTES_14
41.8
MONOCYTES_15
41.7
MONOCYTES_16
41.7
MONOCYTES_17
41.7
MONOCYTES_18
41.6
MONOCYTES_19
41.3
MONOCYTES_20
41.2
MONOCYTES_21
41.1
MONOCYTES_22
41.0
MONOCYTES_23
41.0
MONOCYTES_24
40.9
MONOCYTES_25
40.9
MONOCYTES_26
40.7
MONOCYTES_27
40.6
MONOCYTES_28
40.4
MONOCYTES_29
40.3
MONOCYTES_30
40.2
MONOCYTES_31
40.2
MONOCYTES_32
40.2
MONOCYTES_33
40.1
MONOCYTES_34
39.9
MONOCYTES_35
39.8
MONOCYTES_36
39.8
MONOCYTES_37
39.8
MONOCYTES_38
39.5
MONOCYTES_39
39.5
MONOCYTES_40
39.4
MONOCYTES_41
39.3
MONOCYTES_42
39.1
MONOCYTES_43
39.0
MONOCYTES_44
39.0
MONOCYTES_45
38.8
MONOCYTES_46
38.6
MONOCYTES_47
38.5
MONOCYTES_48
38.3
MONOCYTES_49
38.0
MONOCYTES_50
38.0
MONOCYTES_51
37.6
MONOCYTES_52
37.6
MONOCYTES_53
37.1
MONOCYTES_54
37.1
MONOCYTES_55
37.0
MONOCYTES_56
37.0
MONOCYTES_57
36.9
MONOCYTES_58
36.8
MONOCYTES_59
36.7
MONOCYTES_60
36.4
MONOCYTES_61
36.3
MONOCYTES_62
36.3
MONOCYTES_63
36.3
MONOCYTES_64
36.1
MONOCYTES_65
36.0
MONOCYTES_66
35.9
MONOCYTES_67
35.9
MONOCYTES_68
35.8
MONOCYTES_69
35.7
MONOCYTES_70
35.0
MONOCYTES_71
34.9
MONOCYTES_72
34.8
MONOCYTES_73
34.7
MONOCYTES_74
34.6
MONOCYTES_75
34.3
MONOCYTES_76
34.3
MONOCYTES_77
34.3
MONOCYTES_78
34.1
MONOCYTES_79
34.0
MONOCYTES_80
33.8
MONOCYTES_81
33.3
MONOCYTES_82
33.3
MONOCYTES_83
33.0
MONOCYTES_84
32.6
MONOCYTES_85
32.3
MONOCYTES_86
32.3
MONOCYTES_87
32.2
MONOCYTES_88
32.0
MONOCYTES_89
31.6
MONOCYTES_90
31.5
MONOCYTES_91
28.7
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Non-classical monocyte TPM: 47.4
Samples: 90
Max TPM: 66.2
Min TPM: 34.8
M2_1
66.2
M2_2
59.4
M2_3
58.1
M2_4
56.9
M2_5
56.8
M2_6
56.7
M2_7
56.5
M2_8
56.1
M2_9
55.9
M2_10
55.5
M2_11
55.2
M2_12
54.2
M2_13
54.1
M2_14
53.8
M2_15
53.7
M2_16
53.4
M2_17
53.2
M2_18
52.5
M2_19
52.5
M2_20
52.2
M2_21
51.2
M2_22
51.1
M2_23
51.0
M2_24
50.4
M2_25
50.4
M2_26
50.3
M2_27
50.3
M2_28
50.3
M2_29
50.3
M2_30
50.1
M2_31
50.0
M2_32
49.0
M2_33
48.8
M2_34
48.7
M2_35
48.6
M2_36
48.3
M2_37
48.1
M2_38
48.0
M2_39
48.0
M2_40
47.6
M2_41
47.6
M2_42
47.3
M2_43
47.3
M2_44
46.8
M2_45
46.6
M2_46
46.6
M2_47
46.5
M2_48
46.4
M2_49
46.2
M2_50
46.2
M2_51
45.9
M2_52
45.8
M2_53
45.7
M2_54
45.2
M2_55
45.1
M2_56
45.1
M2_57
44.5
M2_58
44.4
M2_59
44.4
M2_60
44.1
M2_61
43.9
M2_62
43.6
M2_63
43.4
M2_64
43.3
M2_65
43.3
M2_66
43.3
M2_67
43.2
M2_68
43.2
M2_69
43.2
M2_70
43.2
M2_71
43.1
M2_72
42.9
M2_73
42.9
M2_74
42.8
M2_75
42.7
M2_76
42.6
M2_77
42.4
M2_78
42.1
M2_79
41.8
M2_80
41.3
M2_81
41.3
M2_82
41.0
M2_83
40.9
M2_84
40.9
M2_85
40.4
M2_86
39.1
M2_87
38.5
M2_88
37.2
M2_89
35.7
M2_90
34.8
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