A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
107.6
nTPM
Monaco:
61.1
nTPM
Schmiedel:
67.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.6
HPA sample
nTPM
Memory B-cell nTPM: 107.6
Samples: 6
Max nTPM: 198.6
Min nTPM: 64.7
P10809_1017
64.7
P10809_1025
104.3
P10809_1044
198.6
P10809_1063
81.3
P10809_1092
108.0
P10809_1105
88.4
Naive B-cell nTPM: 107.1
Samples: 6
Max nTPM: 196.7
Min nTPM: 50.8
P10809_1011
50.8
P10809_1029
90.1
P10809_1048
196.7
P10809_1067
85.2
P10809_1091
103.8
P10809_1104
116.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 45.9
Samples: 4
Max nTPM: 61.0
Min nTPM: 28.7
RHH5310_R3677
61.0
RHH5218_R3590
42.2
RHH5247_R3619
51.9
RHH5276_R3648
28.7
Naive B-cell nTPM: 50.0
Samples: 4
Max nTPM: 61.8
Min nTPM: 25.6
RHH5308_R3675
56.4
RHH5216_R3588
56.3
RHH5245_R3617
25.6
RHH5274_R3646
61.8
Non-switched memory B-cell nTPM: 46.3
Samples: 4
Max nTPM: 60.7
Min nTPM: 34.8
RHH5309_R3676
43.9
RHH5217_R3589
60.7
RHH5246_R3618
46.0
RHH5275_R3647
34.8
Plasmablast nTPM: 61.1
Samples: 4
Max nTPM: 69.4
Min nTPM: 50.6
RHH5312_R3679
64.2
RHH5220_R3592
60.1
RHH5249_R3621
69.4
RHH5278_R3650
50.6
Switched memory B-cell nTPM: 57.3
Samples: 4
Max nTPM: 72.2
Min nTPM: 45.3
RHH5311_R3678
72.2
RHH5219_R3591
62.0
RHH5248_R3620
49.7
RHH5277_R3649
45.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.8
Schmiedel sample id
TPM
Naive B-cell TPM: 67.8
Samples: 91
Max TPM: 102.3
Min TPM: 34.8
B_CELL_NAIVE_1
102.3
B_CELL_NAIVE_2
97.1
B_CELL_NAIVE_3
95.0
B_CELL_NAIVE_4
92.6
B_CELL_NAIVE_5
90.4
B_CELL_NAIVE_6
88.9
B_CELL_NAIVE_7
88.8
B_CELL_NAIVE_8
87.2
B_CELL_NAIVE_9
85.4
B_CELL_NAIVE_10
84.1
B_CELL_NAIVE_11
82.8
B_CELL_NAIVE_12
82.0
B_CELL_NAIVE_13
80.6
B_CELL_NAIVE_14
80.6
B_CELL_NAIVE_15
80.5
B_CELL_NAIVE_16
79.2
B_CELL_NAIVE_17
78.7
B_CELL_NAIVE_18
78.6
B_CELL_NAIVE_19
77.8
B_CELL_NAIVE_20
76.8
B_CELL_NAIVE_21
76.7
B_CELL_NAIVE_22
76.5
B_CELL_NAIVE_23
76.2
B_CELL_NAIVE_24
76.1
B_CELL_NAIVE_25
75.5
B_CELL_NAIVE_26
75.3
B_CELL_NAIVE_27
74.4
B_CELL_NAIVE_28
73.1
B_CELL_NAIVE_29
72.7
B_CELL_NAIVE_30
71.9
B_CELL_NAIVE_31
71.7
B_CELL_NAIVE_32
70.6
B_CELL_NAIVE_33
70.6
B_CELL_NAIVE_34
70.4
B_CELL_NAIVE_35
70.3
B_CELL_NAIVE_36
70.2
B_CELL_NAIVE_37
70.0
B_CELL_NAIVE_38
69.9
B_CELL_NAIVE_39
69.3
B_CELL_NAIVE_40
69.2
B_CELL_NAIVE_41
69.1
B_CELL_NAIVE_42
69.0
B_CELL_NAIVE_43
68.6
B_CELL_NAIVE_44
68.2
B_CELL_NAIVE_45
67.8
B_CELL_NAIVE_46
67.8
B_CELL_NAIVE_47
66.7
B_CELL_NAIVE_48
66.2
B_CELL_NAIVE_49
66.0
B_CELL_NAIVE_50
65.8
B_CELL_NAIVE_51
65.6
B_CELL_NAIVE_52
65.5
B_CELL_NAIVE_53
65.4
B_CELL_NAIVE_54
65.3
B_CELL_NAIVE_55
65.2
B_CELL_NAIVE_56
65.1
B_CELL_NAIVE_57
64.5
B_CELL_NAIVE_58
63.9
B_CELL_NAIVE_59
63.5
B_CELL_NAIVE_60
62.9
B_CELL_NAIVE_61
62.4
B_CELL_NAIVE_62
60.7
B_CELL_NAIVE_63
60.3
B_CELL_NAIVE_64
60.2
B_CELL_NAIVE_65
60.0
B_CELL_NAIVE_66
59.6
B_CELL_NAIVE_67
59.5
B_CELL_NAIVE_68
59.3
B_CELL_NAIVE_69
59.0
B_CELL_NAIVE_70
58.3
B_CELL_NAIVE_71
58.2
B_CELL_NAIVE_72
57.2
B_CELL_NAIVE_73
57.0
B_CELL_NAIVE_74
56.9
B_CELL_NAIVE_75
55.0
B_CELL_NAIVE_76
54.7
B_CELL_NAIVE_77
54.5
B_CELL_NAIVE_78
54.3
B_CELL_NAIVE_79
54.3
B_CELL_NAIVE_80
53.8
B_CELL_NAIVE_81
53.6
B_CELL_NAIVE_82
53.3
B_CELL_NAIVE_83
53.0
B_CELL_NAIVE_84
51.1
B_CELL_NAIVE_85
51.1
B_CELL_NAIVE_86
50.0
B_CELL_NAIVE_87
49.5
B_CELL_NAIVE_88
48.7
B_CELL_NAIVE_89
48.5
B_CELL_NAIVE_90
41.4
B_CELL_NAIVE_91
34.8
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The Human Protein Atlas project is funded
