A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.9
nTPM
Monaco:
29.2
nTPM
Schmiedel:
26.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.9
HPA sample
nTPM
Classical monocyte nTPM: 3.9
Samples: 6
Max nTPM: 5.8
Min nTPM: 3.1
P10809_1003
3.5
P10809_1020
5.8
P10809_1039
3.1
P10809_1058
4.1
P10809_1080
3.1
P10809_1107
4.0
Intermediate monocyte nTPM: 4.7
Samples: 6
Max nTPM: 6.1
Min nTPM: 3.6
P10809_1004
5.6
P10809_1023
4.7
P10809_1042
3.6
P10809_1061
4.3
P10809_1081
6.1
P10809_1108
3.8
Non-classical monocyte nTPM: 6.8
Samples: 5
Max nTPM: 14.7
Min nTPM: 3.9
P10809_1005
5.7
P10809_1053
5.0
P10809_1072
14.7
P10809_1082
3.9
P10809_1109
4.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.2
Monaco sample
nTPM
Classical monocyte nTPM: 10.9
Samples: 4
Max nTPM: 14.6
Min nTPM: 6.9
RHH5313_R3680
13.4
RHH5221_R3593
14.6
RHH5250_R3622
6.9
RHH5279_R3651
8.8
Intermediate monocyte nTPM: 15.5
Samples: 4
Max nTPM: 20.4
Min nTPM: 8.0
RHH5314_R3681
20.4
RHH5222_R3594
16.9
RHH5251_R3623
16.6
RHH5280_R3652
8.0
Non-classical monocyte nTPM: 29.2
Samples: 4
Max nTPM: 50.2
Min nTPM: 19.9
RHH5315_R3682
21.5
RHH5223_R3595
50.2
RHH5252_R3624
19.9
RHH5281_R3653
25.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Schmiedel sample id
TPM
Classical monocyte TPM: 18.8
Samples: 91
Max TPM: 29.6
Min TPM: 11.3
MONOCYTES_1
29.6
MONOCYTES_2
29.2
MONOCYTES_3
27.1
MONOCYTES_4
26.8
MONOCYTES_5
26.4
MONOCYTES_6
26.2
MONOCYTES_7
26.0
MONOCYTES_8
26.0
MONOCYTES_9
25.8
MONOCYTES_10
24.9
MONOCYTES_11
24.3
MONOCYTES_12
24.2
MONOCYTES_13
23.3
MONOCYTES_14
23.1
MONOCYTES_15
22.7
MONOCYTES_16
22.3
MONOCYTES_17
22.0
MONOCYTES_18
22.0
MONOCYTES_19
21.8
MONOCYTES_20
21.8
MONOCYTES_21
21.8
MONOCYTES_22
21.7
MONOCYTES_23
21.5
MONOCYTES_24
21.5
MONOCYTES_25
20.8
MONOCYTES_26
20.8
MONOCYTES_27
20.6
MONOCYTES_28
20.4
MONOCYTES_29
20.1
MONOCYTES_30
19.9
MONOCYTES_31
19.9
MONOCYTES_32
19.8
MONOCYTES_33
19.7
MONOCYTES_34
19.7
MONOCYTES_35
19.6
MONOCYTES_36
19.4
MONOCYTES_37
19.4
MONOCYTES_38
19.4
MONOCYTES_39
19.3
MONOCYTES_40
18.9
MONOCYTES_41
18.8
MONOCYTES_42
18.7
MONOCYTES_43
18.5
MONOCYTES_44
18.4
MONOCYTES_45
18.3
MONOCYTES_46
18.3
MONOCYTES_47
18.2
MONOCYTES_48
18.2
MONOCYTES_49
18.1
MONOCYTES_50
18.1
MONOCYTES_51
18.1
MONOCYTES_52
17.9
MONOCYTES_53
17.8
MONOCYTES_54
17.8
MONOCYTES_55
17.7
MONOCYTES_56
17.7
MONOCYTES_57
17.6
MONOCYTES_58
17.5
MONOCYTES_59
17.4
MONOCYTES_60
17.2
MONOCYTES_61
17.0
MONOCYTES_62
16.8
MONOCYTES_63
16.6
MONOCYTES_64
16.6
MONOCYTES_65
16.5
MONOCYTES_66
16.4
MONOCYTES_67
16.4
MONOCYTES_68
16.1
MONOCYTES_69
15.9
MONOCYTES_70
15.5
MONOCYTES_71
15.5
MONOCYTES_72
15.4
MONOCYTES_73
15.4
MONOCYTES_74
15.2
MONOCYTES_75
15.1
MONOCYTES_76
14.9
MONOCYTES_77
14.9
MONOCYTES_78
14.7
MONOCYTES_79
14.7
MONOCYTES_80
14.5
MONOCYTES_81
13.6
MONOCYTES_82
13.4
MONOCYTES_83
13.4
MONOCYTES_84
13.3
MONOCYTES_85
13.2
MONOCYTES_86
12.8
MONOCYTES_87
12.3
MONOCYTES_88
12.2
MONOCYTES_89
12.1
MONOCYTES_90
12.0
MONOCYTES_91
11.3
Show allShow less
Non-classical monocyte TPM: 26.4
Samples: 90
Max TPM: 47.1
Min TPM: 16.8
M2_1
47.1
M2_2
42.5
M2_3
42.4
M2_4
40.9
M2_5
38.0
M2_6
37.9
M2_7
37.7
M2_8
36.1
M2_9
35.8
M2_10
35.3
M2_11
34.8
M2_12
34.4
M2_13
34.3
M2_14
34.1
M2_15
33.6
M2_16
32.8
M2_17
32.3
M2_18
32.0
M2_19
31.7
M2_20
31.4
M2_21
30.9
M2_22
30.4
M2_23
30.1
M2_24
29.7
M2_25
29.2
M2_26
28.3
M2_27
28.3
M2_28
28.2
M2_29
27.9
M2_30
27.9
M2_31
27.8
M2_32
27.5
M2_33
27.5
M2_34
27.4
M2_35
27.4
M2_36
26.6
M2_37
26.4
M2_38
26.3
M2_39
26.3
M2_40
26.2
M2_41
25.8
M2_42
25.5
M2_43
25.5
M2_44
25.4
M2_45
25.3
M2_46
25.2
M2_47
25.2
M2_48
25.0
M2_49
24.9
M2_50
24.8
M2_51
24.6
M2_52
24.6
M2_53
24.5
M2_54
24.0
M2_55
23.6
M2_56
23.6
M2_57
23.5
M2_58
23.4
M2_59
23.2
M2_60
23.2
M2_61
23.2
M2_62
23.0
M2_63
22.8
M2_64
22.3
M2_65
22.0
M2_66
21.9
M2_67
21.6
M2_68
21.5
M2_69
21.2
M2_70
21.2
M2_71
21.1
M2_72
20.8
M2_73
20.3
M2_74
20.3
M2_75
20.2
M2_76
20.1
M2_77
19.8
M2_78
19.6
M2_79
19.5
M2_80
19.3
M2_81
18.4
M2_82
18.0
M2_83
17.9
M2_84
17.8
M2_85
17.7
M2_86
17.5
M2_87
17.4
M2_88
17.0
M2_89
16.8
M2_90
16.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
