A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
137.0
nTPM
Monaco:
740.0
nTPM
Schmiedel:
306.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
137.0
HPA sample
nTPM
Classical monocyte nTPM: 137.0
Samples: 6
Max nTPM: 236.5
Min nTPM: 59.8
P10809_1003
59.8
P10809_1020
60.4
P10809_1039
236.5
P10809_1058
118.2
P10809_1080
201.1
P10809_1107
146.2
Intermediate monocyte nTPM: 98.9
Samples: 6
Max nTPM: 171.9
Min nTPM: 42.3
P10809_1004
115.8
P10809_1023
42.3
P10809_1042
54.2
P10809_1061
66.9
P10809_1081
142.2
P10809_1108
171.9
Non-classical monocyte nTPM: 77.6
Samples: 5
Max nTPM: 115.8
Min nTPM: 29.9
P10809_1005
113.6
P10809_1053
29.9
P10809_1072
70.0
P10809_1082
58.9
P10809_1109
115.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
740.0
Monaco sample
nTPM
Classical monocyte nTPM: 740.0
Samples: 4
Max nTPM: 1962.4
Min nTPM: 318.4
RHH5313_R3680
329.2
RHH5221_R3593
1962.4
RHH5250_R3622
318.4
RHH5279_R3651
350.1
Intermediate monocyte nTPM: 547.3
Samples: 4
Max nTPM: 1075.4
Min nTPM: 243.0
RHH5314_R3681
379.0
RHH5222_R3594
1075.4
RHH5251_R3623
491.6
RHH5280_R3652
243.0
Non-classical monocyte nTPM: 401.2
Samples: 4
Max nTPM: 594.3
Min nTPM: 208.6
RHH5315_R3682
447.6
RHH5223_R3595
354.1
RHH5252_R3624
594.3
RHH5281_R3653
208.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
306.2
Schmiedel sample id
TPM
Classical monocyte TPM: 306.2
Samples: 91
Max TPM: 585.4
Min TPM: 116.1
MONOCYTES_1
585.4
MONOCYTES_2
578.5
MONOCYTES_3
576.4
MONOCYTES_4
535.9
MONOCYTES_5
508.7
MONOCYTES_6
463.7
MONOCYTES_7
445.5
MONOCYTES_8
439.3
MONOCYTES_9
427.4
MONOCYTES_10
426.6
MONOCYTES_11
425.4
MONOCYTES_12
422.1
MONOCYTES_13
406.2
MONOCYTES_14
402.7
MONOCYTES_15
395.5
MONOCYTES_16
394.2
MONOCYTES_17
387.2
MONOCYTES_18
386.2
MONOCYTES_19
386.0
MONOCYTES_20
374.2
MONOCYTES_21
367.9
MONOCYTES_22
366.9
MONOCYTES_23
365.6
MONOCYTES_24
364.2
MONOCYTES_25
363.5
MONOCYTES_26
361.9
MONOCYTES_27
355.3
MONOCYTES_28
353.9
MONOCYTES_29
353.6
MONOCYTES_30
350.3
MONOCYTES_31
350.2
MONOCYTES_32
346.6
MONOCYTES_33
344.1
MONOCYTES_34
343.4
MONOCYTES_35
335.5
MONOCYTES_36
335.1
MONOCYTES_37
323.5
MONOCYTES_38
320.3
MONOCYTES_39
315.3
MONOCYTES_40
308.1
MONOCYTES_41
306.4
MONOCYTES_42
304.9
MONOCYTES_43
299.4
MONOCYTES_44
299.2
MONOCYTES_45
298.9
MONOCYTES_46
291.6
MONOCYTES_47
289.5
MONOCYTES_48
287.7
MONOCYTES_49
287.6
MONOCYTES_50
286.6
MONOCYTES_51
283.6
MONOCYTES_52
280.8
MONOCYTES_53
273.2
MONOCYTES_54
269.9
MONOCYTES_55
268.5
MONOCYTES_56
266.0
MONOCYTES_57
260.3
MONOCYTES_58
259.6
MONOCYTES_59
255.4
MONOCYTES_60
254.8
MONOCYTES_61
252.3
MONOCYTES_62
252.3
MONOCYTES_63
251.8
MONOCYTES_64
244.3
MONOCYTES_65
244.3
MONOCYTES_66
244.0
MONOCYTES_67
242.2
MONOCYTES_68
241.9
MONOCYTES_69
239.8
MONOCYTES_70
238.8
MONOCYTES_71
236.0
MONOCYTES_72
232.4
MONOCYTES_73
231.8
MONOCYTES_74
229.8
MONOCYTES_75
225.1
MONOCYTES_76
224.7
MONOCYTES_77
212.7
MONOCYTES_78
209.2
MONOCYTES_79
204.0
MONOCYTES_80
201.2
MONOCYTES_81
198.4
MONOCYTES_82
192.9
MONOCYTES_83
184.6
MONOCYTES_84
183.3
MONOCYTES_85
168.0
MONOCYTES_86
138.8
MONOCYTES_87
135.6
MONOCYTES_88
128.8
MONOCYTES_89
120.9
MONOCYTES_90
119.1
MONOCYTES_91
116.1
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Non-classical monocyte TPM: 245.3
Samples: 90
Max TPM: 466.3
Min TPM: 64.0
M2_1
466.3
M2_2
418.8
M2_3
402.7
M2_4
392.3
M2_5
376.9
M2_6
371.5
M2_7
367.8
M2_8
363.9
M2_9
352.7
M2_10
351.4
M2_11
346.9
M2_12
346.2
M2_13
342.1
M2_14
341.2
M2_15
339.6
M2_16
331.2
M2_17
331.0
M2_18
330.0
M2_19
325.3
M2_20
319.3
M2_21
314.7
M2_22
308.8
M2_23
299.9
M2_24
295.0
M2_25
291.9
M2_26
289.8
M2_27
287.5
M2_28
285.6
M2_29
284.6
M2_30
284.0
M2_31
275.4
M2_32
267.9
M2_33
267.3
M2_34
266.9
M2_35
260.2
M2_36
260.1
M2_37
259.2
M2_38
258.4
M2_39
257.5
M2_40
256.6
M2_41
255.3
M2_42
250.6
M2_43
243.6
M2_44
239.2
M2_45
238.4
M2_46
237.3
M2_47
237.0
M2_48
235.6
M2_49
233.7
M2_50
233.5
M2_51
233.1
M2_52
231.9
M2_53
230.0
M2_54
228.6
M2_55
227.8
M2_56
224.5
M2_57
223.4
M2_58
222.2
M2_59
221.2
M2_60
220.3
M2_61
216.5
M2_62
215.7
M2_63
214.5
M2_64
203.5
M2_65
199.0
M2_66
198.3
M2_67
195.3
M2_68
186.4
M2_69
185.9
M2_70
176.7
M2_71
171.6
M2_72
170.8
M2_73
168.4
M2_74
165.2
M2_75
164.6
M2_76
155.5
M2_77
154.1
M2_78
150.9
M2_79
147.4
M2_80
132.5
M2_81
125.6
M2_82
119.1
M2_83
118.2
M2_84
116.9
M2_85
110.7
M2_86
110.0
M2_87
106.5
M2_88
105.0
M2_89
74.8
M2_90
64.0
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