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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1280.4 nTPM
GTEx:1280.4 nTPM
FANTOM5:2430.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001762Antibody CAB000080Antibody CAB058687
Squamous epithelial cells MediumNot detectedNot detected





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1280.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1280.4
Samples: 170

Max nTPM: 3967.9
Min nTPM: 142.3
Std nTPM: 733.7
Median nTPM: 1154.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 3967.9
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 3546.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3268.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3053.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2976.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2754.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2726.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2567.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2494.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2400.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2368.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2348.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 2334.4
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2324.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2309.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2273.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2213.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2210.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 2209.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2178.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2170.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2167.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2155.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2152.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2144.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2110.3
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2029.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 2021.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2018.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1985.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1983.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1955.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1907.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1902.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1885.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1875.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1869.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1849.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1847.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1821.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1820.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1810.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1807.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1779.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 1767.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1758.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1753.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1744.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1730.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1729.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1704.5
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1679.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1678.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1640.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1638.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1571.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1562.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1497.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1494.7
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1482.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1467.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1466.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1460.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1452.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1447.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1442.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1423.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1418.6
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1412.2
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1401.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1399.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1365.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1364.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1351.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1329.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1329.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1320.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1308.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1290.7
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1236.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1226.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1197.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1193.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1187.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1157.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1151.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1124.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1119.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1090.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1061.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1058.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1052.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1025.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1024.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1019.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1017.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1011.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1008.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 995.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 959.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 952.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 952.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 924.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 922.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 917.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 914.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 902.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 899.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 881.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 878.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 847.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 833.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 831.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 824.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 824.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 806.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 791.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 781.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 779.4
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 770.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 761.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 744.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 741.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 737.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 729.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 722.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 715.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 702.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 697.8
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 691.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 674.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 642.3
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 641.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 639.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 622.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 618.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 611.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 584.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 581.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 574.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 559.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 552.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 530.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 523.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 521.3
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 501.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 498.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 498.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 491.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 489.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 487.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 448.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 436.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 436.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 434.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 382.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 372.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 350.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 345.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 334.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 322.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 304.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 276.0
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 269.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 267.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 227.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 203.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 201.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 178.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 142.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2430.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 2430.2
FF:10204-103F6 68 years, female 2430.2

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