A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.4
nTPM
Monaco:
46.0
nTPM
Schmiedel:
40.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.4
HPA sample
nTPM
Classical monocyte nTPM: 12.0
Samples: 6
Max nTPM: 16.4
Min nTPM: 7.3
P10809_1003
14.4
P10809_1020
16.4
P10809_1039
9.8
P10809_1058
7.3
P10809_1080
16.3
P10809_1107
7.6
Intermediate monocyte nTPM: 13.0
Samples: 6
Max nTPM: 21.0
Min nTPM: 7.5
P10809_1004
14.5
P10809_1023
21.0
P10809_1042
13.8
P10809_1061
7.5
P10809_1081
11.5
P10809_1108
9.5
Non-classical monocyte nTPM: 20.4
Samples: 5
Max nTPM: 36.6
Min nTPM: 10.7
P10809_1005
15.8
P10809_1053
22.1
P10809_1072
36.6
P10809_1082
10.7
P10809_1109
17.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.0
Monaco sample
nTPM
Classical monocyte nTPM: 31.7
Samples: 4
Max nTPM: 79.5
Min nTPM: 12.8
RHH5313_R3680
15.5
RHH5221_R3593
19.1
RHH5250_R3622
79.5
RHH5279_R3651
12.8
Intermediate monocyte nTPM: 21.6
Samples: 4
Max nTPM: 38.0
Min nTPM: 10.5
RHH5314_R3681
15.8
RHH5222_R3594
21.9
RHH5251_R3623
38.0
RHH5280_R3652
10.5
Non-classical monocyte nTPM: 46.0
Samples: 4
Max nTPM: 61.4
Min nTPM: 30.0
RHH5315_R3682
52.5
RHH5223_R3595
61.4
RHH5252_R3624
40.1
RHH5281_R3653
30.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.8
Schmiedel sample id
TPM
Classical monocyte TPM: 24.2
Samples: 91
Max TPM: 55.3
Min TPM: 12.3
MONOCYTES_1
55.3
MONOCYTES_2
40.0
MONOCYTES_3
37.8
MONOCYTES_4
37.8
MONOCYTES_5
36.7
MONOCYTES_6
36.3
MONOCYTES_7
35.8
MONOCYTES_8
34.5
MONOCYTES_9
33.3
MONOCYTES_10
33.2
MONOCYTES_11
31.9
MONOCYTES_12
31.3
MONOCYTES_13
31.0
MONOCYTES_14
30.8
MONOCYTES_15
30.8
MONOCYTES_16
29.7
MONOCYTES_17
29.6
MONOCYTES_18
29.3
MONOCYTES_19
29.3
MONOCYTES_20
29.2
MONOCYTES_21
29.1
MONOCYTES_22
29.1
MONOCYTES_23
29.0
MONOCYTES_24
28.8
MONOCYTES_25
28.8
MONOCYTES_26
28.7
MONOCYTES_27
28.5
MONOCYTES_28
28.4
MONOCYTES_29
28.0
MONOCYTES_30
27.1
MONOCYTES_31
26.7
MONOCYTES_32
26.6
MONOCYTES_33
26.0
MONOCYTES_34
25.4
MONOCYTES_35
25.3
MONOCYTES_36
25.2
MONOCYTES_37
25.0
MONOCYTES_38
24.9
MONOCYTES_39
24.7
MONOCYTES_40
24.3
MONOCYTES_41
23.9
MONOCYTES_42
23.8
MONOCYTES_43
23.5
MONOCYTES_44
23.5
MONOCYTES_45
23.3
MONOCYTES_46
22.8
MONOCYTES_47
22.2
MONOCYTES_48
22.1
MONOCYTES_49
22.1
MONOCYTES_50
22.0
MONOCYTES_51
21.8
MONOCYTES_52
21.6
MONOCYTES_53
21.4
MONOCYTES_54
21.3
MONOCYTES_55
21.1
MONOCYTES_56
20.3
MONOCYTES_57
20.1
MONOCYTES_58
20.1
MONOCYTES_59
20.1
MONOCYTES_60
19.7
MONOCYTES_61
19.7
MONOCYTES_62
19.6
MONOCYTES_63
19.6
MONOCYTES_64
19.6
MONOCYTES_65
19.5
MONOCYTES_66
19.4
MONOCYTES_67
19.2
MONOCYTES_68
19.2
MONOCYTES_69
19.2
MONOCYTES_70
19.0
MONOCYTES_71
18.6
MONOCYTES_72
18.5
MONOCYTES_73
18.4
MONOCYTES_74
18.3
MONOCYTES_75
18.1
MONOCYTES_76
17.5
MONOCYTES_77
17.4
MONOCYTES_78
17.4
MONOCYTES_79
17.3
MONOCYTES_80
17.2
MONOCYTES_81
17.0
MONOCYTES_82
16.9
MONOCYTES_83
16.3
MONOCYTES_84
16.1
MONOCYTES_85
16.0
MONOCYTES_86
16.0
MONOCYTES_87
15.0
MONOCYTES_88
14.8
MONOCYTES_89
14.7
MONOCYTES_90
14.5
MONOCYTES_91
12.3
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Non-classical monocyte TPM: 40.8
Samples: 90
Max TPM: 99.0
Min TPM: 18.3
M2_1
99.0
M2_2
82.5
M2_3
80.2
M2_4
72.8
M2_5
67.8
M2_6
65.8
M2_7
65.4
M2_8
64.2
M2_9
60.2
M2_10
58.2
M2_11
56.7
M2_12
56.3
M2_13
55.4
M2_14
54.4
M2_15
54.3
M2_16
54.1
M2_17
53.7
M2_18
53.3
M2_19
52.8
M2_20
52.5
M2_21
52.0
M2_22
50.0
M2_23
48.2
M2_24
47.8
M2_25
47.3
M2_26
46.1
M2_27
46.0
M2_28
46.0
M2_29
45.6
M2_30
44.5
M2_31
42.9
M2_32
42.3
M2_33
42.2
M2_34
42.2
M2_35
42.1
M2_36
41.6
M2_37
40.9
M2_38
40.3
M2_39
39.5
M2_40
39.4
M2_41
39.4
M2_42
39.3
M2_43
39.1
M2_44
38.9
M2_45
38.8
M2_46
38.6
M2_47
38.5
M2_48
37.5
M2_49
37.2
M2_50
37.0
M2_51
36.9
M2_52
36.5
M2_53
36.2
M2_54
35.7
M2_55
35.6
M2_56
35.4
M2_57
35.3
M2_58
34.6
M2_59
34.3
M2_60
33.7
M2_61
32.5
M2_62
32.2
M2_63
32.0
M2_64
31.8
M2_65
31.7
M2_66
31.5
M2_67
31.2
M2_68
30.9
M2_69
30.6
M2_70
29.5
M2_71
29.4
M2_72
27.6
M2_73
26.6
M2_74
26.6
M2_75
26.3
M2_76
26.2
M2_77
25.3
M2_78
25.2
M2_79
24.9
M2_80
24.6
M2_81
23.4
M2_82
23.3
M2_83
23.2
M2_84
22.1
M2_85
21.2
M2_86
19.7
M2_87
18.7
M2_88
18.7
M2_89
18.6
M2_90
18.3
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